Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

19753189 .. 19755583

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27957.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTGCATGACTCTCGGTAATTCTTCCTCCGCGATCGACGAAATGGAGGAAGGTCGTCGTGTACATGAAATTGAAAGAGACTTGACCGAGCCAGATGGAATTGTTGGTGAGCTGTTGCAGCCCGGGGGTTATCTCAAGTTGATTGAGTTGGGTCTCGGGGATTGTGCAAATGAGTCAATTGATGCGCAGAAGGTGTTTGGTTATGCTCTTTACAAAGATGGCAAGGATACAACACTGACTTATCCCTTGGAACAATATAGGTCAGATATAGACAAAACTTTTGACCTTGCGAATAGAGAAGCAATGGATGAATCTGCCGAGTGGAGGCTGAAATATGATGTAGAAGCAGAAAGGTCTACCAAGTGTATGAACGAACTCAAACAGATAAAGGGATCTCTGGAGGAGGATGGAAATGCTGCTAATATCAACCTGAAATTGGTGATGCTACAAAAGGCTAAACAAATTGAAGCCTTGAAACAAGAGCTTGAGACTGAAAAGCTGAAGTGCCGATTCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

173

Amino Acids

19.52

Weight (kDa)

4.66

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	356
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	1 cut(s)	400
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	2 cut(s)	324, 436
AgsI	TTSAA	3 cut(s)	74, 467, 475
AluBI	AGCT	3 cut(s)	112, 484, 499
AluI	AGCT	3 cut(s)	112, 484, 499
Alw26I	GTCTC	3 cut(s)	72, 158, 482
AlwI	GGATC	1 cut(s)	400
Ama87I	CYCGRG	2 cut(s)	122, 155
ApeKI	GCWGC	2 cut(s)	118, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspLEI	GCGC	1 cut(s)	187
AsuC2I	CCSGG	2 cut(s)	123, 124
AsuHPI	GGTGA	2 cut(s)	119, 451
AvaI	CYCGRG	2 cut(s)	122, 155
BbvI	GCAGC	2 cut(s)	130, 403
BccI	CCATC	3 cut(s)	89, 212, 401
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	123, 124
BcoDI	GTCTC	3 cut(s)	72, 158, 482
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	2 cut(s)	119, 417
BlsI	GCNGC	2 cut(s)	120, 418
Bme1390I	CCNGG	2 cut(s)	123, 124
BmeT110I	CYCGRG	2 cut(s)	122, 155
BmrFI	CCNGG	2 cut(s)	123, 124
BmsI	GCATC	2 cut(s)	172, 432
BpmI	CTGGAG	1 cut(s)	419
BpuEI	CTTGAG	2 cut(s)	119, 506
BpuMI	CCSGG	2 cut(s)	123, 124
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	122, 123, 246
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 436
Bse3DI	GCAATG	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	122, 123, 246
BseGI	GGATG	2 cut(s)	313, 412
BseLI	CCNNNNNNNGG	2 cut(s)	324, 436
BseMI	GCAATG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	130, 403
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	36
BsiHKCI	CYCGRG	2 cut(s)	122, 155
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	324, 436
BsmAI	GTCTC	3 cut(s)	72, 158, 482
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	2 cut(s)	122, 155
Bsp1407I	TGTACA	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	33, 392
BspACI	CCGC	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	32
BspPI	GGATC	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	309
BsrGI	TGTACA	1 cut(s)	61
BssECI	CCNNGG	3 cut(s)	122, 123, 246
BssMI	GATC	2 cut(s)	33, 392
BssT1I	CCWWGG	1 cut(s)	246
BstAUI	TGTACA	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	313, 412
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	2 cut(s)	36, 395
BstMAI	GTCTC	3 cut(s)	72, 158, 482
BstMBI	GATC	2 cut(s)	33, 392
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	121, 122
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	130, 403
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	313, 412
BtsIMutI	CAGTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	187
Cfr9I	CCCGGG	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	2 cut(s)	7, 65
CviJI	RGCY	8 cut(s)	91, 112, 121, 328, 455, 470, 484, 499
CviKI_1	RGCY	8 cut(s)	91, 112, 121, 328, 455, 470, 484, 499
CviQI	GTAC	1 cut(s)	62
DpnI	GATC	2 cut(s)	35, 394
DpnII	GATC	2 cut(s)	33, 392
Eco130I	CCWWGG	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	158
Eco88I	CYCGRG	2 cut(s)	122, 155
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	10, 68
FaiI	YATR	7 cut(s)	8, 66, 204, 258, 269, 336, 368
FatI	CATG	2 cut(s)	6, 64
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	2 cut(s)	119, 417
FokI	GGATG	2 cut(s)	320, 419
Fsp4HI	GCNGC	2 cut(s)	119, 417
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	2 cut(s)	119, 417
GsuI	CTGGAG	1 cut(s)	419
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	10, 68
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	4 cut(s)	10, 173, 311, 510
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	119, 451
Hpy166II	GTNNAC	2 cut(s)	62, 357
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	2 cut(s)	62, 357
Hpy99I	CGWCG	2 cut(s)	41, 60
HpyAV	CCTTC	2 cut(s)	44, 184
HpyCH4V	TGCA	3 cut(s)	6, 118, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	10, 68
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	2 cut(s)	33, 392
LpnPI	CCDG	4 cut(s)	105, 136, 383, 443
Lsp1109I	GCAGC	2 cut(s)	130, 403
LweI	GCATC	2 cut(s)	172, 432
MalI	GATC	2 cut(s)	35, 394
MboI	GATC	2 cut(s)	33, 392
MboII	GAAGA	1 cut(s)	15
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	392
MluCI	AATT	6 cut(s)	19, 69, 99, 177, 434, 462
MlyI	GAGTC	2 cut(s)	4, 182
MnlI	CCTC	5 cut(s)	37, 40, 318, 394, 397
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	123, 124
MunI	CAATTG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	118
NciI	CCSGG	2 cut(s)	123, 124
NdeII	GATC	2 cut(s)	33, 392
NlaIII	CATG	2 cut(s)	10, 68
NmeAIII	GCCGAG	1 cut(s)	343
NsbI	TGCGCA	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	311, 510
PkrI	GCNGC	2 cut(s)	120, 418
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	2 cut(s)	4, 181
PpsI	GAGTC	2 cut(s)	4, 181
PsuI	RGATCY	1 cut(s)	392
PvuI	CGATCG	1 cut(s)	36
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SatI	GCNGC	2 cut(s)	119, 417
Sau3AI	GATC	2 cut(s)	33, 392
SchI	GAGTC	2 cut(s)	4, 182
ScrFI	CCNGG	2 cut(s)	123, 124
SetI	ASST	9 cut(s)	55, 114, 195, 263, 288, 356, 432, 486, 501
SfaNI	GCATC	2 cut(s)	172, 432
SmaI	CCCGGG	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	134, 485
SmoI	CTYRAG	2 cut(s)	134, 485
Sse9I	AATT	6 cut(s)	19, 69, 99, 177, 434, 462
SsiI	CCGC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	121, 122
StyI	CCWWGG	1 cut(s)	246
TaqI	TCGA	1 cut(s)	36
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	6 cut(s)	19, 69, 99, 177, 434, 462
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	311, 510
TscAI	CASTG	1 cut(s)	240
TseI	GCWGC	2 cut(s)	118, 416
TspDTI	ATGAA	3 cut(s)	81, 324, 383
TspMI	CCCGGG	1 cut(s)	122
TspRI	CASTG	1 cut(s)	240
XmaI	CCCGGG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.