Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

18819184 .. 18823157

Gene Structure 3974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012442

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAATTGGATAGTGAACCTGATATAATTGATGGTGCAGGTGCTGAAACAGGACATGCGAAATGTAGAGAAACTGGAGAGATTGTTGCTATCAAGAAGGTTCTCCAAGACAAGCATTACAAGAACCTGGAGTTACAGATTATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTACAGACAGAGAAGAGGTTTACTTGAATCTCGTACTTGAATTTGTTCCTGAAACTGTTTACCGTAACCCAAGGAACTATAGCAGGATCAACCAGCGGATGCCTTTAACATATGTTAAACTTTATACCTACCAGGTAAAGCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCCTGGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGCTAACATCTATGGTGTTGGCCGCTTAATGCTTCCGTTCCCTTCACCTAAACGCATGTGGCTTGGGTTTCTATTGATCTTGAGTGCATCACACATCATATTCAGTCTCTTAAGGTATCATGTTCCTCGGTATTGGCTCAAGCCATCCCAAAATCTGTTGGTGGTGTTTGAGGAGTTTACTGGCAATGTTACAAAAATTGATCTTCTGAAAGTCACCCACGTGTTGAGAAACGGCAGACCAAGAACCGAGGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

240

Amino Acids

27.59

Weight (kDa)

9.01

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 110	7.7e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	29
AciI	CCGC	2 cut(s)	292, 484
AclWI	GGATC	2 cut(s)	162, 290
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	1 cut(s)	236
AcvI	CACGTG	1 cut(s)	682
AfaI	GTAC	1 cut(s)	231
AflII	CTTAAG	1 cut(s)	571
AflIII	ACRYGT	1 cut(s)	681
AgsI	TTSAA	4 cut(s)	195, 223, 236, 461
AjnI	CCWGG	3 cut(s)	126, 327, 424
AleI	CACNNNNGTG	1 cut(s)	680
AluBI	AGCT	3 cut(s)	352, 415, 464
AluI	AGCT	3 cut(s)	352, 415, 464
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	2 cut(s)	162, 290
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	498, 667
BbrPI	CACGTG	1 cut(s)	682
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	26, 613
BceAI	ACGGC	1 cut(s)	709
BciT130I	CCWGG	3 cut(s)	128, 329, 426
BcoDI	GTCTC	1 cut(s)	572
BfmI	CTRYAG	2 cut(s)	198, 274
BfrI	CTTAAG	1 cut(s)	571
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	422, 484
BlsI	GCNGC	2 cut(s)	423, 485
Bme1390I	CCNGG	3 cut(s)	128, 329, 426
BmrFI	CCNGG	3 cut(s)	128, 329, 426
BmsI	GCATC	2 cut(s)	285, 557
BpmI	CTGGAG	2 cut(s)	96, 149
BpuEI	CTTGAG	3 cut(s)	406, 562, 584
BsaAI	YACGTR	1 cut(s)	682
BsaJI	CCNNGG	4 cut(s)	266, 425, 587, 708
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse1I	ACTGG	2 cut(s)	79, 646
Bse3DI	GCAATG	2 cut(s)	181, 652
BseBI	CCWGG	3 cut(s)	128, 329, 426
BseDI	CCNNGG	4 cut(s)	266, 425, 587, 708
BseGI	GGATG	2 cut(s)	300, 605
BseMI	GCAATG	2 cut(s)	181, 652
BseNI	ACTGG	2 cut(s)	79, 646
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	483
BsmAI	GTCTC	1 cut(s)	572
BsnI	GGCC	1 cut(s)	483
Bsp143I	GATC	4 cut(s)	154, 282, 537, 661
BspACI	CCGC	2 cut(s)	292, 484
BspANI	GGCC	1 cut(s)	483
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	2 cut(s)	162, 290
BspTI	CTTAAG	1 cut(s)	571
BsrDI	GCAATG	2 cut(s)	181, 652
BsrI	ACTGG	2 cut(s)	79, 646
BssECI	CCNNGG	4 cut(s)	266, 425, 587, 708
BssMI	GATC	4 cut(s)	154, 282, 537, 661
BssT1I	CCWWGG	1 cut(s)	266
Bst2UI	CCWGG	3 cut(s)	128, 329, 426
Bst4CI	ACNGT	2 cut(s)	253, 260
Bst6I	CTCTTC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	571
BstBAI	YACGTR	1 cut(s)	682
BstF5I	GGATG	2 cut(s)	300, 605
BstKTI	GATC	4 cut(s)	157, 285, 540, 664
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	4 cut(s)	154, 282, 537, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNI	CCWGG	3 cut(s)	128, 329, 426
BstNSI	RCATGY	2 cut(s)	59, 520
BstSCI	CCNGG	3 cut(s)	126, 327, 424
BstSFI	CTRYAG	2 cut(s)	198, 274
BstV1I	GCAGC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	300, 605
BveI	ACCTGC	1 cut(s)	29
CaiI	CAGNNNCTG	1 cut(s)	44
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	3 cut(s)	56, 517, 581
CviQI	GTAC	1 cut(s)	230
DpnI	GATC	4 cut(s)	156, 284, 539, 663
DpnII	GATC	4 cut(s)	154, 282, 537, 661
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	434
Eco72I	CACGTG	1 cut(s)	682
EcoRII	CCWGG	3 cut(s)	126, 327, 424
EcoRV	GATATC	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	3 cut(s)	59, 520, 584
FatI	CATG	3 cut(s)	55, 516, 580
FauNDI	CATATG	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	422, 484
FokI	GGATG	2 cut(s)	307, 592
Fsp4HI	GCNGC	2 cut(s)	422, 484
GluI	GCNGC	2 cut(s)	422, 484
GsuI	CTGGAG	2 cut(s)	96, 149
HaeIII	GGCC	1 cut(s)	483
Hin1II	CATG	3 cut(s)	59, 520, 584
HinfI	GANTC	1 cut(s)	223
HphI	GGTGA	2 cut(s)	498, 667
Hpy166II	GTNNAC	4 cut(s)	17, 217, 256, 639
Hpy188I	TCNGA	1 cut(s)	669
Hpy188III	TCNNGA	5 cut(s)	94, 245, 385, 458, 541
Hpy8I	GTNNAC	4 cut(s)	17, 217, 256, 639
HpyAV	CCTTC	2 cut(s)	91, 513
HpyCH4III	ACNGT	2 cut(s)	253, 260
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	5 cut(s)	38, 145, 377, 421, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	3 cut(s)	59, 520, 584
Kzo9I	GATC	4 cut(s)	154, 282, 537, 661
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	2 cut(s)	285, 557
MabI	ACCWGGT	1 cut(s)	327
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	4 cut(s)	132, 260, 649, 673
MalI	GATC	4 cut(s)	156, 284, 539, 663
MboI	GATC	4 cut(s)	154, 282, 537, 661
MboII	GAAGA	2 cut(s)	221, 656
MluCI	AATT	6 cut(s)	5, 27, 236, 402, 440, 657
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	4 cut(s)	205, 597, 625, 703
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	4 cut(s)	302, 312, 488, 572
MslI	CAYNNNNRTG	1 cut(s)	680
MspA1I	CMGCKG	2 cut(s)	292, 352
MspCI	CTTAAG	1 cut(s)	571
MspR9I	CCNGG	3 cut(s)	128, 329, 426
MvaI	CCWGG	3 cut(s)	128, 329, 426
MwoI	GCNNNNNNNGC	1 cut(s)	421
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	4 cut(s)	154, 282, 537, 661
NlaIII	CATG	3 cut(s)	59, 520, 584
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	2 cut(s)	59, 520
OliI	CACNNNNGTG	1 cut(s)	680
PaqCI	CACCTGC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	423, 485
PmaCI	CACGTG	1 cut(s)	682
PmlI	CACGTG	1 cut(s)	682
Ppu21I	YACGTR	1 cut(s)	682
Psp6I	CCWGG	3 cut(s)	126, 327, 424
PspCI	CACGTG	1 cut(s)	682
PspGI	CCWGG	3 cut(s)	126, 327, 424
PstNI	CAGNNNCTG	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	680
SaqAI	TTAA	4 cut(s)	302, 312, 488, 572
SatI	GCNGC	2 cut(s)	422, 484
Sau3AI	GATC	4 cut(s)	154, 282, 537, 661
ScrFI	CCNGG	3 cut(s)	128, 329, 426
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	2 cut(s)	285, 557
SfcI	CTRYAG	2 cut(s)	198, 274
SmiMI	CAYNNNNRTG	1 cut(s)	680
SmlI	CTYRAG	4 cut(s)	385, 541, 571, 599
SmoI	CTYRAG	4 cut(s)	385, 541, 571, 599
Sse9I	AATT	6 cut(s)	5, 27, 236, 402, 440, 657
SsiI	CCGC	2 cut(s)	292, 484
StyD4I	CCNGG	3 cut(s)	126, 327, 424
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	2 cut(s)	253, 260
TaiI	ACGT	1 cut(s)	684
TasI	AATT	6 cut(s)	5, 27, 236, 402, 440, 657
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	4 cut(s)	302, 312, 488, 572
Tru9I	TTAA	4 cut(s)	302, 312, 488, 572
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	486
Vha464I	CTTAAG	1 cut(s)	571
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	2 cut(s)	59, 520
XmnI	GAANNNNTTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.