Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

46636356 .. 46639188

Gene Structure 2833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCACATGTATTCTCTTCAAAACCAGGAGGTTGTGCAGCGTTTCTCTCAAACTGCAATGCAATCTCAGCTGCAACGGTTACTTTCAATGACCGAAACTGTGAGATCCCTGCTTGTTCCAACAGCGTCCTTCCAGACTGCGAAAATGTTGTATTCAACACTGCCAAATTATGTTCTGTAATGATAAGATCAACTTATGGGACTCTGCAAGACCAGAGATTCACTTTTACAGGAGATGTAAACATGCATGCTGGGGTGAATAAAATTTTGCTTCTAAGTGTAGCTGTTGGATTACCGGTTTCCTATTGTGATGTAAAGGGACCAGTTGTTCAACAAGGATTAGATCAAGGAAGTAGAGATTTATCAGGGCAAATATGGTCATACAAGGTTGGGCTAAACGGAGAATCCATGAATCTCGGTTCTCCAACTTCCACATTTGCAGTGAATTGGACGAGGGTGTATCATGTTCCGCAGTCTTGGCTCAAGCCATCTCAAAATCTGTTGGTGGTTTTGAGGAGCTTGCTGGCGATGTTACAAAGATTGATCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

183

Amino Acids

19.85

Weight (kDa)

8.51

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHD	PF17834	2 - 56	2.8e-17	Beta-sandwich domain in beta galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	264
AflIII	ACRYGT	1 cut(s)	7
AgeI	ACCGGT	1 cut(s)	295
AgsI	TTSAA	4 cut(s)	21, 88, 157, 332
AjnI	CCWGG	1 cut(s)	25
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
AluBI	AGCT	3 cut(s)	71, 284, 519
AluI	AGCT	3 cut(s)	71, 284, 519
AlwI	GGATC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	38, 71
ApoI	RAATTY	1 cut(s)	264
AsiGI	ACCGGT	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	50, 58
BccI	CCATC	1 cut(s)	496
BciT130I	CCWGG	1 cut(s)	27
BisI	GCNGC	2 cut(s)	39, 72
BlsI	GCNGC	2 cut(s)	40, 73
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	467
BsaWI	WCCGGW	1 cut(s)	295
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	529
BseXI	GCAGC	2 cut(s)	50, 58
BseYI	CCCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	57
BshTI	ACCGGT	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	2 cut(s)	214, 333
BsmFI	GGGAC	2 cut(s)	214, 333
Bsp143I	GATC	4 cut(s)	105, 188, 343, 543
BspACI	CCGC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	295
BssMI	GATC	4 cut(s)	105, 188, 343, 543
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	79, 101
Bst6I	CTCTTC	1 cut(s)	22
BstC8I	GCNNGC	3 cut(s)	249, 521, 525
BstDEI	CTNAG	2 cut(s)	67, 275
BstKTI	GATC	4 cut(s)	108, 191, 346, 546
BstMBI	GATC	4 cut(s)	105, 188, 343, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 478
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	3 cut(s)	11, 247, 251
BstSCI	CCNGG	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	50, 58
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	542
BtsI	GCAGTG	2 cut(s)	159, 447
BtsIMutI	CAGTG	2 cut(s)	159, 447
Cac8I	GCNNGC	3 cut(s)	249, 521, 525
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	1 cut(s)	115
CspAI	ACCGGT	1 cut(s)	295
CviAII	CATG	5 cut(s)	8, 244, 248, 409, 464
CviJI	RGCY	6 cut(s)	71, 284, 394, 481, 487, 519
CviKI_1	RGCY	6 cut(s)	71, 284, 394, 481, 487, 519
DdeI	CTNAG	2 cut(s)	67, 275
DpnI	GATC	4 cut(s)	107, 190, 345, 545
DpnII	GATC	4 cut(s)	105, 188, 343, 543
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	249
FaeI	CATG	5 cut(s)	11, 247, 251, 412, 467
FaiI	YATR	9 cut(s)	9, 172, 198, 245, 249, 376, 382, 410, 465
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FaqI	GGGAC	2 cut(s)	214, 333
FatI	CATG	5 cut(s)	7, 243, 247, 408, 463
Fnu4HI	GCNGC	2 cut(s)	39, 72
Fsp4HI	GCNGC	2 cut(s)	39, 72
GluI	GCNGC	2 cut(s)	39, 72
GsaI	CCCAGC	1 cut(s)	255
HapII	CCGG	1 cut(s)	296
HgaI	GACGC	1 cut(s)	115
Hin1II	CATG	5 cut(s)	11, 247, 251, 412, 467
HinfI	GANTC	4 cut(s)	202, 219, 404, 412
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	551
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	79, 101
HpyCH4V	TGCA	7 cut(s)	38, 57, 62, 74, 208, 247, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 478
HpyF3I	CTNAG	2 cut(s)	67, 275
Hsp92II	CATG	5 cut(s)	11, 247, 251, 412, 467
Kzo9I	GATC	4 cut(s)	105, 188, 343, 543
LmnI	GCTCC	1 cut(s)	516
Lsp1109I	GCAGC	2 cut(s)	50, 58
MaeIII	GTNAC	2 cut(s)	79, 531
MalI	GATC	4 cut(s)	107, 190, 345, 545
MboI	GATC	4 cut(s)	105, 188, 343, 543
MboII	GAAGA	2 cut(s)	9, 538
MflI	RGATCY	1 cut(s)	105
MluCI	AATT	3 cut(s)	167, 264, 445
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	3 cut(s)	144, 268, 449
MnlI	CCTC	3 cut(s)	23, 447, 507
Mph1103I	ATGCAT	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	68, 478
NdeII	GATC	4 cut(s)	105, 188, 343, 543
NlaIII	CATG	5 cut(s)	11, 247, 251, 412, 467
NlaIV	GGNNCC	1 cut(s)	321
NsiI	ATGCAT	1 cut(s)	249
NspI	RCATGY	3 cut(s)	11, 247, 251
PaeI	GCATGC	1 cut(s)	251
PciI	ACATGT	1 cut(s)	7
PfeI	GAWTC	3 cut(s)	219, 404, 412
PinAI	ACCGGT	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	40, 73
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PscI	ACATGT	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	71
SatI	GCNGC	2 cut(s)	39, 72
Sau3AI	GATC	4 cut(s)	105, 188, 343, 543
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	5 cut(s)	34, 73, 286, 390, 521
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SphI	GCATGC	1 cut(s)	251
Sse9I	AATT	3 cut(s)	167, 264, 445
SsiI	CCGC	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	79, 101
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	3 cut(s)	167, 264, 445
TfiI	GAWTC	3 cut(s)	219, 404, 412
TscAI	CASTG	2 cut(s)	166, 447
TseI	GCWGC	2 cut(s)	38, 71
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	166, 447
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	3 cut(s)	11, 247, 251
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.