Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

58469159 .. 58470990

Gene Structure 1832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG423100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGCTGCCGAGCTAGAGTGGAATATAGGGTAGTGGAGGACCTTAATTCCATCAAGTCTATGCTATTGGCTATTGCTTTGAGTTCAAGCTGGATATACATTAATGATTTAAAATTGACATTTCGTTGCAGCAATGACCATGTTTGTCAAAATTACATTCCATTTCTTCAGTGGTCTCCTTGGATGTTTCAAAGGATTTGCTTTTGCCCCAACAACATATTTTCTCCCTTGCATAATGTGGCTTGCCTTCCAGACTGCGAAATTGTTGTATTCAACATTGCCAAAGTGGAACTTCAGACATCCCAAAAACAATTTTTTCCCACCAACTATGAGTTATGGTCATGGGAAACCTTCGGTGAAGACATTTCTTCATGGACAGTTTGTATATGGACGAGGGTGTCTATAAGGACACAGAATCAACAGCCACTGACTTGGTATAAGGCCAATTTTGATGCACCTGAAGGGGACGAGCCTTTGGCTTTGGACATGGGGAGCATGGGGAAGGGTGAAGTACGGATAACAGTGGAAGATACAGGACTGTTCATGCTAATGGTAACTGCAGCACGTGCGGTTATTTTGGTACATTCAGGATTAACAAGTTCCAATTTGGTTGTCTCCAACCGACTCAACAATGGCATGTATAAACTTGTTTACCACTGGATCAGAAAAAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

225

Amino Acids

26.02

Weight (kDa)

6.94

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	143 - 173	1.5e-07	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	397
AciI	CCGC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	668
AcuI	CTGAAG	3 cut(s)	152, 278, 480
AcvI	CACGTG	1 cut(s)	566
AfaI	GTAC	2 cut(s)	513, 582
AgsI	TTSAA	3 cut(s)	87, 191, 274
AluBI	AGCT	2 cut(s)	14, 90
AluI	AGCT	2 cut(s)	14, 90
Alw26I	GTCTC	2 cut(s)	180, 619
AlwI	GGATC	1 cut(s)	668
AlwNI	CAGNNNCTG	1 cut(s)	427
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	3 cut(s)	6, 129, 560
AseI	ATTAAT	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	368, 518
AvaII	GGWCC	1 cut(s)	40
BbrPI	CACGTG	1 cut(s)	566
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	141, 572
BccI	CCATC	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	180, 619
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	558
BisI	GCNGC	3 cut(s)	7, 130, 561
BlsI	GCNGC	3 cut(s)	8, 131, 562
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	662
Bse3DI	GCAATG	2 cut(s)	139, 276
BseDI	CCNNGG	1 cut(s)	179
BseGI	GGATG	2 cut(s)	189, 299
BseMI	GCAATG	2 cut(s)	139, 276
BseNI	ACTGG	1 cut(s)	662
BseXI	GCAGC	2 cut(s)	141, 572
BshFI	GGCC	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	479
BsmAI	GTCTC	2 cut(s)	180, 619
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	443
Bso31I	GGTCTC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	660
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	1 cut(s)	443
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	1 cut(s)	668
BspTNI	GGTCTC	1 cut(s)	180
BsrDI	GCAATG	2 cut(s)	139, 276
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	379, 523, 540
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	189, 299
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	2 cut(s)	180, 619
BstMBI	GATC	1 cut(s)	660
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	640
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	2 cut(s)	141, 572
BstV2I	GAAGAC	1 cut(s)	366
BstXI	CCANNNNNNTGG	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	189, 299
BtsIMutI	CAGTG	4 cut(s)	176, 425, 528, 655
Cac8I	GCNNGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	512, 581
CviAII	CATG	7 cut(s)	140, 342, 372, 487, 496, 544, 637
CviJI	RGCY	9 cut(s)	6, 14, 71, 90, 242, 424, 443, 472, 479
CviKI_1	RGCY	9 cut(s)	6, 14, 71, 90, 242, 424, 443, 472, 479
CviQI	GTAC	2 cut(s)	512, 581
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
DraI	TTTAAA	1 cut(s)	111
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	3 cut(s)	152, 278, 480
Eco72I	CACGTG	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	7 cut(s)	143, 345, 375, 490, 499, 547, 640
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	7 cut(s)	139, 341, 371, 486, 495, 543, 636
Fnu4HI	GCNGC	3 cut(s)	7, 130, 561
FokI	GGATG	2 cut(s)	196, 286
Fsp4HI	GCNGC	3 cut(s)	7, 130, 561
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	3 cut(s)	7, 130, 561
HaeIII	GGCC	1 cut(s)	443
Hin1II	CATG	7 cut(s)	143, 345, 375, 490, 499, 547, 640
HinfI	GANTC	2 cut(s)	415, 624
HphI	GGTGA	2 cut(s)	368, 518
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	2 cut(s)	297, 665
Hpy188III	TCNNGA	2 cut(s)	251, 588
Hpy8I	GTNNAC	1 cut(s)	652
HpyAV	CCTTC	4 cut(s)	257, 361, 455, 496
HpyCH4III	ACNGT	3 cut(s)	379, 523, 540
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	4 cut(s)	129, 232, 455, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	7 cut(s)	143, 345, 375, 490, 499, 547, 640
Kzo9I	GATC	1 cut(s)	660
LmnI	GCTCC	1 cut(s)	492
LpnPI	CCDG	6 cut(s)	76, 264, 471, 519, 573, 643
Lsp1109I	GCAGC	2 cut(s)	141, 572
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MboII	GAAGA	4 cut(s)	158, 360, 371, 539
MluCI	AATT	7 cut(s)	46, 113, 151, 261, 311, 445, 604
MlyI	GAGTC	1 cut(s)	618
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	2 cut(s)	31, 387
MseI	TTAA	5 cut(s)	45, 102, 110, 593, 676
MslI	CAYNNNNRTG	1 cut(s)	548
MwoI	GCNNNNNNNGC	1 cut(s)	566
NdeII	GATC	1 cut(s)	660
NlaIII	CATG	7 cut(s)	143, 345, 375, 490, 499, 547, 640
NmeAIII	GCCGAG	1 cut(s)	35
NspI	RCATGY	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	3 cut(s)	8, 131, 562
PleI	GAGTC	1 cut(s)	618
PmaCI	CACGTG	1 cut(s)	566
PmlI	CACGTG	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	618
Ppu21I	YACGTR	1 cut(s)	566
PpuMI	RGGWCCY	1 cut(s)	40
PshBI	ATTAAT	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	566
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	427
RsaI	GTAC	2 cut(s)	513, 582
RsaNI	GTAC	2 cut(s)	512, 581
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	5 cut(s)	45, 102, 110, 593, 676
SatI	GCNGC	3 cut(s)	7, 130, 561
Sau3AI	GATC	1 cut(s)	660
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	618
SetI	ASST	6 cut(s)	16, 45, 92, 353, 460, 568
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	548
Sse9I	AATT	7 cut(s)	46, 113, 151, 261, 311, 445, 604
SsiI	CCGC	1 cut(s)	569
SspMI	CTAG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	3 cut(s)	379, 523, 540
TaiI	ACGT	1 cut(s)	568
TasI	AATT	7 cut(s)	46, 113, 151, 261, 311, 445, 604
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	5 cut(s)	45, 102, 110, 593, 676
Tru9I	TTAA	5 cut(s)	45, 102, 110, 593, 676
TscAI	CASTG	4 cut(s)	176, 432, 528, 662
TseI	GCWGC	3 cut(s)	6, 129, 560
TspDTI	ATGAA	2 cut(s)	360, 532
TspGWI	ACGGA	1 cut(s)	529
TspRI	CASTG	4 cut(s)	176, 432, 528, 662
VpaK11BI	GGWCC	1 cut(s)	40
VspI	ATTAAT	1 cut(s)	102
XceI	RCATGY	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.