Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Forward (+)

22389430 .. 22390446

Gene Structure 1017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23876

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTGTCAAAGAACAATGGTCCTCACTTTGAGACACGGAATGCTGGAGTACTGGGACCAGTTGCTCTACATGGACTAGACCAAGGAAGCAGAGACTTATCATGGCAGAAATGGTCACACAAGGTGGGCCTAAAAGGAGAAGCCATGAACCTGGGTTCTCCAAGTTCCATCTCGACAGTGGATTGGACGAGGGTGTCCTTAGCGGCGAAGAATCAACAGCCACTGACATGGTTTAAGGTCAATTTTGATGCACCTGAAGGAGATGAACCTTTGGCTTTGGACATGGGAAGTATGGGCAAGGGTCAACTATGGATCAATGGGCAAAGCATTGGAAGATACTGGACTACTTATGCTAACGGGGATTGCAGTGCGTGTAGCTATTCTGGTACCTTCAGGCCTAAGAACAAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

137

Amino Acids

14.96

Weight (kDa)

8.84

Isoelectric Point (pI)

24.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	75 - 116	3.7e-18	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	193
Acc65I	GGTACC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	386
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	320
AcuI	CTGAAG	2 cut(s)	276, 376
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	2 cut(s)	51, 388
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	1 cut(s)	378
AluI	AGCT	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	26, 87
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	223
AoxI	GGCC	2 cut(s)	127, 395
Asp718I	GGTACC	1 cut(s)	386
AspS9I	GGNCC	3 cut(s)	20, 56, 127
AvaII	GGWCC	2 cut(s)	20, 56
BanI	GGYRCC	1 cut(s)	386
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	26, 87
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BmcAI	AGTACT	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	2 cut(s)	20, 56
BmgT120I	GGNCC	3 cut(s)	20, 56, 127
BmiI	GGNNCC	2 cut(s)	57, 388
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	66
Bpu10I	CCTNAGC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	82, 151
Bse1I	ACTGG	3 cut(s)	57, 59, 344
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	82, 151
BseNI	ACTGG	3 cut(s)	57, 59, 344
BshFI	GGCC	2 cut(s)	129, 397
BshNI	GGYRCC	1 cut(s)	386
BslFI	GGGAC	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	26, 87
BsmFI	GGGAC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	129, 397
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	2 cut(s)	129, 397
BspLI	GGNNCC	2 cut(s)	57, 388
BspPI	GGATC	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	386
BsrI	ACTGG	3 cut(s)	57, 59, 344
BssECI	CCNNGG	2 cut(s)	82, 151
BssMI	GATC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	199, 399
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	2 cut(s)	26, 87
BstMBI	GATC	1 cut(s)	312
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstXI	CCANNNNNNTGG	2 cut(s)	151, 228
BsuRI	GGCC	2 cut(s)	129, 397
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	3 cut(s)	183, 221, 373
CaiI	CAGNNNCTG	1 cut(s)	223
Cfr13I	GGNCC	3 cut(s)	20, 56, 127
Csp6I	GTAC	2 cut(s)	50, 387
CviAII	CATG	5 cut(s)	71, 102, 145, 228, 283
CviJI	RGCY	6 cut(s)	129, 143, 220, 275, 378, 397
CviKI_1	RGCY	6 cut(s)	129, 143, 220, 275, 378, 397
CviQI	GTAC	2 cut(s)	50, 387
DdeI	CTNAG	2 cut(s)	199, 399
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DraIII	CACNNNGTG	1 cut(s)	124
DrdI	GACNNNNNNGTC	1 cut(s)	193
DseDI	GACNNNNNNGTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	397
Eco47I	GGWCC	2 cut(s)	20, 56
Eco57I	CTGAAG	2 cut(s)	276, 376
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	5 cut(s)	74, 105, 148, 231, 286
FaiI	YATR	8 cut(s)	72, 103, 146, 229, 284, 293, 310, 351
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	5 cut(s)	70, 101, 144, 227, 282
Fnu4HI	GCNGC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	129, 397
Hin1II	CATG	5 cut(s)	74, 105, 148, 231, 286
HincII	GTYRAC	1 cut(s)	305
HindII	GTYRAC	1 cut(s)	305
HinfI	GANTC	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	251, 400
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	251, 366
HpyF3I	CTNAG	2 cut(s)	199, 399
Hsp92II	CATG	5 cut(s)	74, 105, 148, 231, 286
KpnI	GGTACC	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	312
LpnPI	CCDG	9 cut(s)	30, 38, 72, 137, 164, 267, 325, 369, 379
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	2 cut(s)	220, 345
MluCI	AATT	1 cut(s)	241
MnlI	CCTC	2 cut(s)	33, 183
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	152
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	5 cut(s)	74, 105, 148, 231, 286
NlaIV	GGNNCC	2 cut(s)	57, 388
NmuCI	GTSAC	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	397
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	57, 388
PspPI	GGNCC	3 cut(s)	20, 56, 127
PstNI	CAGNNNCTG	1 cut(s)	223
RsaI	GTAC	2 cut(s)	51, 388
RsaNI	GTAC	2 cut(s)	50, 387
RseI	CAYNNNNRTG	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	3 cut(s)	20, 56, 127
ScaI	AGTACT	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	7 cut(s)	126, 153, 240, 256, 271, 380, 392
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	2 cut(s)	20, 56
SmiMI	CAYNNNNRTG	1 cut(s)	226
Sse9I	AATT	1 cut(s)	241
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	397
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	173
TasI	AATT	1 cut(s)	241
TatI	WGTACW	1 cut(s)	49
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	3 cut(s)	183, 228, 373
TseFI	GTSAC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	161, 279
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	3 cut(s)	183, 228, 373
VpaK11BI	GGWCC	2 cut(s)	20, 56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XspI	CTAG	1 cut(s)	77
ZrmI	AGTACT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.