Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Forward (+)

53588521 .. 53589040

Gene Structure 520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030030

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAGGGTGTCTATAAGGACACAGAATGAACAGCCACTGACTTGGTATAAGGCCAATTTTGATGCACCTGAAGGGGACGAGCCTTTGGCTTTGGACATGGGGAGCATGGGGAAGGGTGAAGTACAGATAACATTGGAAGATACTGGACTGTTCATGCTAATGGTAACTGCAGCGCGTGCGGTTATTTTGGTACATTCAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCGACTCAACAATGGTATCATGTTCCTCGGTCTTGGCTCAAGCCACCCCAAAATCTGTTGGTGGTATATGAGGACGTTGCTGGCATGTTACAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

110

Amino Acids

12.12

Weight (kDa)

6.06

Isoelectric Point (pI)

22.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	13 - 43	2.6e-08	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	175
AciI	CCGC	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	123, 192
Alw26I	GTCTC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	37
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	128
BaeI	ACNNNNGTAYC	2 cut(s)	229, 262
BbvI	GCAGC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmsI	GCATC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	53
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	175
BspMAI	CTGCAG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	177, 312
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	177, 312
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	122, 191
CviAII	CATG	5 cut(s)	97, 106, 154, 250, 315
CviJI	RGCY	6 cut(s)	34, 53, 82, 89, 267, 273
CviKI_1	RGCY	6 cut(s)	34, 53, 82, 89, 267, 273
CviQI	GTAC	2 cut(s)	122, 191
Eco57I	CTGAAG	1 cut(s)	90
FaeI	CATG	5 cut(s)	100, 109, 157, 253, 318
FaiI	YATR	9 cut(s)	14, 48, 98, 107, 155, 251, 297, 299, 316
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	5 cut(s)	96, 105, 153, 249, 314
Fnu4HI	GCNGC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	171
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	5 cut(s)	100, 109, 157, 253, 318
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	1 cut(s)	234
HphI	GGTGA	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	198
HpyAV	CCTTC	2 cut(s)	65, 106
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	65, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	5 cut(s)	100, 109, 157, 253, 318
HspAI	GCGC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	4 cut(s)	81, 129, 183, 296
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	163, 317
MboII	GAAGA	1 cut(s)	149
MluCI	AATT	2 cut(s)	55, 214
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	266, 294
MseI	TTAA	2 cut(s)	203, 328
MslI	CAYNNNNRTG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	176
NlaIII	CATG	5 cut(s)	100, 109, 157, 253, 318
NspI	RCATGY	1 cut(s)	318
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	37
RsaI	GTAC	2 cut(s)	123, 192
RsaNI	GTAC	2 cut(s)	122, 191
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	203, 328
SatI	GCNGC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	228
SetI	ASST	2 cut(s)	70, 308
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	2 cut(s)	55, 214
SsiI	CCGC	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	1 cut(s)	308
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	2 cut(s)	55, 214
TatI	WGTACW	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	203, 328
Tru9I	TTAA	2 cut(s)	203, 328
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	42, 142
TspRI	CASTG	1 cut(s)	42
XceI	RCATGY	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.