Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

24875998 .. 24879908

Gene Structure 3911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG241700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCAAAGAATCTGTGGTTCTAACAAAGACAAGCGTTACAAGAACCGGGAGTTACAGATTATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTATAGACAAAGAAGAGGTTTACTTGAATCTCGTACTTGAATTTGTTCCTGAAACTGTTTACCGTATCCCAAGGAACTATAGCAGGATCAACCAGCGGATGCCTTTAATATATGTTAAACTTTATACCTACCAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCGTGACATCAAGCCTCAAAATTTACTTGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCCTGGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGATTGTGCAATGAGTCGATTGATGCCCAGAAAGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAACACTGTCTTATCCCTTGGAGGCTTGGAGGCATCTGCTCATATGGACCAGTTTCTCTTCTCTCTGGTCTTAACCCTCGTCCATTACACTTGTTTCTCCATTTGTTTGCAGCTGCCATCTATGGTGTTGGCCGCTTAATGCTTCCGTTCCCTTCACCTAAACGCATGTGGCTTGGGTTTCTATTGATCTTGAGTGCATCACACATCATATTCAGTCTCTTAAGCAATCAAATGAAGCACTATGTCATGCTAAATAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

262

Amino Acids

30.29

Weight (kDa)

9.6

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 130	1.2e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	12 - 129	2.5e-11	Protein tyrosine and serine/threonine kinase
SE	PF08491	177 - 232	1.2e-11	Squalene epoxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	211, 658
AclWI	GGATC	2 cut(s)	81, 209
AcoI	YGGCCR	1 cut(s)	655
AcsI	RAATTY	2 cut(s)	155, 316
AfaI	GTAC	1 cut(s)	150
AflII	CTTAAG	1 cut(s)	745
AgsI	TTSAA	4 cut(s)	114, 142, 155, 455
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	3 cut(s)	346, 409, 638
AluI	AGCT	3 cut(s)	346, 409, 638
Alw26I	GTCTC	1 cut(s)	746
AlwI	GGATC	2 cut(s)	81, 209
AoxI	GGCC	1 cut(s)	655
ApeKI	GCWGC	3 cut(s)	415, 635, 638
ApoI	RAATTY	2 cut(s)	155, 316
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	572
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	287, 672
AvaII	GGWCC	1 cut(s)	572
BaeGI	GKGCMC	1 cut(s)	262
BbvI	GCAGC	3 cut(s)	427, 625, 647
BccI	CCATC	2 cut(s)	508, 650
BciT130I	CCWGG	1 cut(s)	420
BciVI	GTATCC	2 cut(s)	191, 516
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	746
BfmI	CTRYAG	2 cut(s)	117, 193
BfrI	CTTAAG	1 cut(s)	745
BfuI	GTATCC	2 cut(s)	191, 516
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	4 cut(s)	416, 636, 639, 658
BlsI	GCNGC	4 cut(s)	417, 637, 640, 659
Bme1390I	CCNGG	2 cut(s)	47, 420
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmrFI	CCNGG	2 cut(s)	47, 420
BmsI	GCATC	5 cut(s)	204, 297, 468, 567, 731
BpuEI	CTTGAG	2 cut(s)	400, 736
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	185, 419, 542
Bse1I	ACTGG	1 cut(s)	575
Bse3DI	GCAATG	2 cut(s)	100, 471
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	185, 419, 542
BseGI	GGATG	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	100, 471
BseNI	ACTGG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	3 cut(s)	427, 625, 647
BshFI	GGCC	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	746
BsnI	GGCC	1 cut(s)	657
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	4 cut(s)	73, 201, 249, 711
BspACI	CCGC	2 cut(s)	211, 658
BspANI	GGCC	1 cut(s)	657
BspPI	GGATC	2 cut(s)	81, 209
BspTI	CTTAAG	1 cut(s)	745
BsrDI	GCAATG	2 cut(s)	100, 471
BsrI	ACTGG	1 cut(s)	575
BssECI	CCNNGG	3 cut(s)	185, 419, 542
BssMI	GATC	4 cut(s)	73, 201, 249, 711
BssT1I	CCWWGG	2 cut(s)	185, 542
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	4 cut(s)	172, 179, 299, 533
Bst6I	CTCTTC	2 cut(s)	123, 588
BstAFI	CTTAAG	1 cut(s)	745
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	4 cut(s)	76, 204, 252, 714
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	4 cut(s)	73, 201, 249, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	2 cut(s)	45, 418
BstSFI	CTRYAG	2 cut(s)	117, 193
BstSLI	GKGCMC	1 cut(s)	262
BstV1I	GCAGC	3 cut(s)	427, 625, 647
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuI	GTATCC	2 cut(s)	191, 516
BsuRI	GGCC	1 cut(s)	657
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	2 cut(s)	691, 772
CviJI	RGCY	9 cut(s)	310, 346, 388, 409, 418, 550, 638, 657, 697
CviKI_1	RGCY	9 cut(s)	310, 346, 388, 409, 418, 550, 638, 657, 697
CviQI	GTAC	1 cut(s)	149
DpnI	GATC	4 cut(s)	75, 203, 251, 713
DpnII	GATC	4 cut(s)	73, 201, 249, 711
EaeI	YGGCCR	1 cut(s)	655
Eam1104I	CTCTTC	2 cut(s)	123, 588
EarI	CTCTTC	2 cut(s)	123, 588
Eco130I	CCWWGG	2 cut(s)	185, 542
Eco32I	GATATC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	418
EcoRV	GATATC	1 cut(s)	428
EcoT14I	CCWWGG	2 cut(s)	185, 542
ErhI	CCWWGG	2 cut(s)	185, 542
FaeI	CATG	2 cut(s)	694, 775
FatI	CATG	2 cut(s)	690, 771
FauNDI	CATATG	1 cut(s)	568
Fnu4HI	GCNGC	4 cut(s)	416, 636, 639, 658
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	4 cut(s)	416, 636, 639, 658
GluI	GCNGC	4 cut(s)	416, 636, 639, 658
HaeIII	GGCC	1 cut(s)	657
HapII	CCGG	1 cut(s)	46
Hin1II	CATG	2 cut(s)	694, 775
HinfI	GANTC	3 cut(s)	9, 142, 469
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	2 cut(s)	287, 672
Hpy166II	GTNNAC	2 cut(s)	136, 175
Hpy188III	TCNNGA	4 cut(s)	164, 379, 452, 715
Hpy8I	GTNNAC	2 cut(s)	136, 175
HpyAV	CCTTC	2 cut(s)	513, 687
HpyCH4III	ACNGT	4 cut(s)	172, 179, 299, 533
HpyCH4V	TGCA	7 cut(s)	4, 64, 371, 415, 464, 635, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
Hsp92II	CATG	2 cut(s)	694, 775
Kzo9I	GATC	4 cut(s)	73, 201, 249, 711
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	3 cut(s)	427, 625, 647
LweI	GCATC	5 cut(s)	204, 297, 468, 567, 731
MaeIII	GTNAC	4 cut(s)	35, 51, 293, 299
MalI	GATC	4 cut(s)	75, 203, 251, 713
MboI	GATC	4 cut(s)	73, 201, 249, 711
MboII	GAAGA	3 cut(s)	140, 467, 575
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	4 cut(s)	155, 316, 396, 434
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	5 cut(s)	124, 321, 540, 548, 612
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	5 cut(s)	221, 231, 597, 662, 746
MspA1I	CMGCKG	3 cut(s)	211, 346, 638
MspCI	CTTAAG	1 cut(s)	745
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	2 cut(s)	47, 420
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	415
NciI	CCSGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	4 cut(s)	73, 201, 249, 711
NlaIII	CATG	2 cut(s)	694, 775
NmuCI	GTSAC	2 cut(s)	293, 299
NspI	RCATGY	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	9, 142
PkrI	GCNGC	4 cut(s)	417, 637, 640, 659
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	249
PvuII	CAGCTG	2 cut(s)	346, 638
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SaqAI	TTAA	5 cut(s)	221, 231, 597, 662, 746
SatI	GCNGC	4 cut(s)	416, 636, 639, 658
Sau3AI	GATC	4 cut(s)	73, 201, 249, 711
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	2 cut(s)	47, 420
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	6 cut(s)	135, 245, 348, 411, 640, 685
SfaNI	GCATC	5 cut(s)	204, 297, 468, 567, 731
SfcI	CTRYAG	2 cut(s)	117, 193
SinI	GGWCC	1 cut(s)	572
SmlI	CTYRAG	3 cut(s)	379, 715, 745
SmoI	CTYRAG	3 cut(s)	379, 715, 745
Sse9I	AATT	4 cut(s)	155, 316, 396, 434
SsiI	CCGC	2 cut(s)	211, 658
StyD4I	CCNGG	2 cut(s)	45, 418
StyI	CCWWGG	2 cut(s)	185, 542
TaaI	ACNGT	4 cut(s)	172, 179, 299, 533
TaqI	TCGA	1 cut(s)	472
TasI	AATT	4 cut(s)	155, 316, 396, 434
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	2 cut(s)	9, 142
Tru1I	TTAA	5 cut(s)	221, 231, 597, 662, 746
Tru9I	TTAA	5 cut(s)	221, 231, 597, 662, 746
TscAI	CASTG	1 cut(s)	536
TseFI	GTSAC	2 cut(s)	293, 299
TseI	GCWGC	3 cut(s)	415, 635, 638
Tsp45I	GTSAC	2 cut(s)	293, 299
TspDTI	ATGAA	1 cut(s)	773
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	1 cut(s)	536
Vha464I	CTTAAG	1 cut(s)	745
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	2 cut(s)	155, 316
XceI	RCATGY	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmnI	GAANNNNTTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.