Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Forward (+)

87187918 .. 87192449

Gene Structure 4532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G050500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGAGAGAAAGGTGAGTGGGTGTCGACCAAGGGAAATTTCGTGAATTACTTGCCCCAAGATGAGGCAGTTGCCGCTGGCCTCGGCGCCGACGAAGGTGGATTGGACGCCGTGGAGTCTCAGAGAGTCGATAGTGAACCTGATATAATTGATGGTGCGGGTGCTGAAACAGGACATGTAATACGCACAACTGTTGGCGGTCGAGGTGGTCAATCTAGACAGACAGTGAGTTATATTTCAGAACATGTGGTTGGAACTGGCTCTTTTGGGGTTGTTTTCCAGGTTGGTTCTCCGATCCAAGACAAGCGTTACAAGAACCGGGAGTTACAGATTATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTACAGACAAAGAAGAGGTTTACTTGAATCTCGTACTTGAATTTGTTCCTGAAACTGTTTACTGTATCCCAAGGAACTATAGCAGGATCAACCAGCGAATGCCTTTAATATATGTTAAACTTTATACCTACCAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCATGACATCAAGCCTCAAAATTTACTTGTAAATCCACACACAAATCAGTTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCCTAGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGATTGGGCAATGAGTCGATTGATGCCCAGAAATTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAACACTGTCTTATCCCTTGGAGGCTTGGAGGCATCTGCTCATATGGACCAGTTTCTCTTCTCTCTGGTCTTAACCCTCGTCCATTACACTTGTTTCTCCATTTCTTTGCAGGTGCCATCTATGGTGTTGGCCTCTTAATGCTTCTGTTCCCTTCACTTAAACGCATGTGGCTTGGGTTTCTATTGATCTTGGACACTAGGATCAGTAATAAAGCAGTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

340

Amino Acids

38.05

Weight (kDa)

8.08

Isoelectric Point (pI)

28.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	105 - 222	8.7e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	106 - 219	5.6e-10	Protein tyrosine and serine/threonine kinase
SE	PF08491	268 - 320	6.6e-11	Squalene epoxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	899
Acc36I	ACCTGC	1 cut(s)	899
AccB1I	GGYRCC	2 cut(s)	86, 911
AccI	GTMKAC	1 cut(s)	26
AciI	CCGC	3 cut(s)	75, 158, 198
AclWI	GGATC	4 cut(s)	289, 354, 482, 1007
AcsI	RAATTY	3 cut(s)	37, 428, 589
AcyI	GRCGYC	2 cut(s)	87, 108
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflIII	ACRYGT	2 cut(s)	175, 244
AgsI	TTSAA	5 cut(s)	387, 415, 428, 622, 728
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	4 cut(s)	23, 55, 234, 266
AluBI	AGCT	2 cut(s)	682, 1020
AluI	AGCT	2 cut(s)	682, 1020
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	4 cut(s)	289, 354, 482, 1007
AoxI	GGCC	2 cut(s)	79, 928
ApeKI	GCWGC	1 cut(s)	688
ApoI	RAATTY	3 cut(s)	37, 428, 589
Asp700I	GAANNNNTTC	1 cut(s)	432
AspA2I	CCTAGG	1 cut(s)	692
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	845
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	26, 560
AvaII	GGWCC	1 cut(s)	845
AvrII	CCTAGG	1 cut(s)	692
BaeGI	GKGCMC	1 cut(s)	535
BanI	GGYRCC	2 cut(s)	86, 911
BbvI	GCAGC	1 cut(s)	700
BccI	CCATC	3 cut(s)	146, 781, 923
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	2 cut(s)	464, 789
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	4 cut(s)	216, 693, 996, 1021
BfmI	CTRYAG	2 cut(s)	390, 466
BfoI	RGCGCY	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	899
BfuI	GTATCC	2 cut(s)	464, 789
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	2 cut(s)	75, 689
BlnI	CCTAGG	1 cut(s)	692
BlsI	GCNGC	2 cut(s)	76, 690
Bme1390I	CCNGG	2 cut(s)	281, 320
Bme18I	GGWCC	1 cut(s)	845
BmgT120I	GGNCC	1 cut(s)	845
BmiI	GGNNCC	2 cut(s)	88, 913
BmrFI	CCNGG	2 cut(s)	281, 320
BmsI	GCATC	3 cut(s)	570, 741, 840
BpuEI	CTTGAG	1 cut(s)	673
BpuMI	CCSGG	1 cut(s)	320
BsaHI	GRCGYC	2 cut(s)	87, 108
BsaJI	CCNNGG	6 cut(s)	30, 82, 111, 458, 692, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	262, 848
Bse3DI	GCAATG	2 cut(s)	373, 744
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	6 cut(s)	30, 82, 111, 458, 692, 815
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	2 cut(s)	373, 744
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	262, 848
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	1 cut(s)	700
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	81, 930
BshNI	GGYRCC	2 cut(s)	86, 911
BsiEI	CGRYCG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	81, 930
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	6 cut(s)	294, 346, 474, 522, 984, 999
BspACI	CCGC	3 cut(s)	75, 158, 198
BspANI	GGCC	2 cut(s)	81, 930
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	88, 913
BspMI	ACCTGC	1 cut(s)	899
BspPI	GGATC	4 cut(s)	289, 354, 482, 1007
BspT107I	GGYRCC	2 cut(s)	86, 911
BsrDI	GCAATG	2 cut(s)	373, 744
BsrI	ACTGG	2 cut(s)	262, 848
BssECI	CCNNGG	6 cut(s)	30, 82, 111, 458, 692, 815
BssMI	GATC	6 cut(s)	294, 346, 474, 522, 984, 999
BssNI	GRCGYC	2 cut(s)	87, 108
BssT1I	CCWWGG	4 cut(s)	30, 458, 692, 815
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	5 cut(s)	193, 226, 445, 452, 806
Bst6I	CTCTTC	2 cut(s)	396, 861
BstACI	GRCGYC	2 cut(s)	87, 108
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	6 cut(s)	297, 349, 477, 525, 987, 1002
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	6 cut(s)	294, 346, 474, 522, 984, 999
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 688
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	3 cut(s)	179, 248, 967
BstSCI	CCNGG	2 cut(s)	279, 318
BstSFI	CTRYAG	2 cut(s)	390, 466
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	1 cut(s)	700
BstX2I	RGATCY	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	522
BsuI	GTATCC	2 cut(s)	464, 789
BsuRI	GGCC	2 cut(s)	81, 930
BtgI	CCRYGG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	1020
BtsIMutI	CAGTG	3 cut(s)	231, 802, 1020
BveI	ACCTGC	1 cut(s)	899
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	845
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	4 cut(s)	176, 245, 572, 964
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	1 cut(s)	120
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	6 cut(s)	296, 348, 476, 524, 986, 1001
DpnII	GATC	6 cut(s)	294, 346, 474, 522, 984, 999
Eam1104I	CTCTTC	2 cut(s)	396, 861
EarI	CTCTTC	2 cut(s)	396, 861
Eco130I	CCWWGG	4 cut(s)	30, 458, 692, 815
Eco32I	GATATC	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	1 cut(s)	701
EcoT14I	CCWWGG	4 cut(s)	30, 458, 692, 815
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
ErhI	CCWWGG	4 cut(s)	30, 458, 692, 815
FaeI	CATG	4 cut(s)	179, 248, 575, 967
FatI	CATG	4 cut(s)	175, 244, 571, 963
FauI	CCCGC	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	841
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	75, 689
Fsp4HI	GCNGC	2 cut(s)	75, 689
FspBI	CTAG	4 cut(s)	216, 693, 996, 1021
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	2 cut(s)	75, 689
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	81, 930
HapII	CCGG	1 cut(s)	319
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	2 cut(s)	87, 108
Hin1II	CATG	4 cut(s)	179, 248, 575, 967
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	4 cut(s)	116, 126, 415, 742
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	2 cut(s)	26, 560
Hpy166II	GTNNAC	4 cut(s)	27, 137, 409, 448
Hpy188I	TCNGA	3 cut(s)	123, 241, 294
Hpy188III	TCNNGA	5 cut(s)	43, 216, 437, 652, 725
Hpy8I	GTNNAC	4 cut(s)	27, 137, 409, 448
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	89, 786, 960
HpyCH4III	ACNGT	5 cut(s)	193, 226, 445, 452, 806
HpyCH4V	TGCA	4 cut(s)	337, 644, 688, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 688
HpyF3I	CTNAG	1 cut(s)	120
Hsp92I	GRCGYC	2 cut(s)	87, 108
Hsp92II	CATG	4 cut(s)	179, 248, 575, 967
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
Kzo9I	GATC	6 cut(s)	294, 346, 474, 522, 984, 999
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	1 cut(s)	700
LweI	GCATC	3 cut(s)	570, 741, 840
MaeI	CTAG	4 cut(s)	216, 693, 996, 1021
MaeIII	GTNAC	3 cut(s)	308, 324, 566
MalI	GATC	6 cut(s)	296, 348, 476, 524, 986, 1001
MboI	GATC	6 cut(s)	294, 346, 474, 522, 984, 999
MboII	GAAGA	3 cut(s)	413, 740, 848
MflI	RGATCY	1 cut(s)	522
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	8 cut(s)	37, 46, 147, 428, 589, 669, 707, 760
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	3 cut(s)	125, 135, 751
MmeI	TCCRAC	2 cut(s)	232, 324
MnlI	CCTC	9 cut(s)	58, 92, 197, 397, 594, 813, 821, 885, 941
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	5 cut(s)	494, 504, 870, 935, 957
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	2 cut(s)	281, 320
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	74, 688
NarI	GGCGCC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	320
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	6 cut(s)	294, 346, 474, 522, 984, 999
NlaIII	CATG	4 cut(s)	179, 248, 575, 967
NlaIV	GGNNCC	2 cut(s)	88, 913
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	566
NspI	RCATGY	3 cut(s)	179, 248, 967
PaqCI	CACCTGC	1 cut(s)	899
PciI	ACATGT	2 cut(s)	175, 244
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	2 cut(s)	76, 690
PleI	GAGTC	3 cut(s)	124, 134, 750
PluTI	GGCGCC	1 cut(s)	90
PpsI	GAGTC	3 cut(s)	124, 134, 750
PscI	ACATGT	2 cut(s)	175, 244
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	88, 913
PspPI	GGNCC	1 cut(s)	845
PsuI	RGATCY	1 cut(s)	522
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SalI	GTCGAC	1 cut(s)	25
SaqAI	TTAA	5 cut(s)	494, 504, 870, 935, 957
SatI	GCNGC	2 cut(s)	75, 689
Sau3AI	GATC	6 cut(s)	294, 346, 474, 522, 984, 999
Sau96I	GGNCC	1 cut(s)	845
SchI	GAGTC	3 cut(s)	125, 135, 751
ScrFI	CCNGG	2 cut(s)	281, 320
SduI	GDGCHC	1 cut(s)	535
SfaNI	GCATC	3 cut(s)	570, 741, 840
SfcI	CTRYAG	2 cut(s)	390, 466
SfoI	GGCGCC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	845
SmlI	CTYRAG	1 cut(s)	652
SmoI	CTYRAG	1 cut(s)	652
Sse9I	AATT	8 cut(s)	37, 46, 147, 428, 589, 669, 707, 760
SsiI	CCGC	3 cut(s)	75, 158, 198
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	4 cut(s)	216, 693, 996, 1021
StyD4I	CCNGG	2 cut(s)	279, 318
StyI	CCWWGG	4 cut(s)	30, 458, 692, 815
TaaI	ACNGT	5 cut(s)	193, 226, 445, 452, 806
TaqI	TCGA	4 cut(s)	26, 129, 202, 745
TasI	AATT	8 cut(s)	37, 46, 147, 428, 589, 669, 707, 760
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	5 cut(s)	494, 504, 870, 935, 957
Tru9I	TTAA	5 cut(s)	494, 504, 870, 935, 957
TscAI	CASTG	3 cut(s)	231, 809, 1020
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	1 cut(s)	688
Tsp45I	GTSAC	1 cut(s)	566
TspRI	CASTG	3 cut(s)	231, 809, 1020
VpaK11BI	GGWCC	1 cut(s)	845
XapI	RAATTY	3 cut(s)	37, 428, 589
XbaI	TCTAGA	1 cut(s)	215
XceI	RCATGY	3 cut(s)	179, 248, 967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	763
XmaJI	CCTAGG	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	4 cut(s)	216, 693, 996, 1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.