Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

72310196 .. 72310802

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34196

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCATATTCAGGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTAGGAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTCGGGGAGCTATTGCAGCCTGGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGATTGTGCAATGAGTCGATTGATGCCCAGAAAGTGTTTGGTTATGCTCTTTACAAAGCTGGGAAGGATACAACACTGTCTTATCCCTTTGAGGCTTAGAGGCATGTGCTCATATGGACCAGTTTCTCTTCTCTCTGGTCTTAACCCTCATCCATTACACTTGTTTCTCCATTTCTTTGCAGCTGCCATCTATGGTGTTGGCCGCTTAATGCTTCCTTTCCCTTCACCTAAACGCATGTGGCTTGGGTTTCTATTGATCTTGGTATGTCAAAGAAATTATTTACACTTCTTTCTTGCGTTCACGTTTGTCAATTATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

154

Amino Acids

17.68

Weight (kDa)

9.6

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SE	PF08491	73 - 128	1.6e-11	Squalene epoxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AciI	CCGC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	343
AgsI	TTSAA	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	4 cut(s)	34, 97, 202, 326
AluI	AGCT	4 cut(s)	34, 97, 202, 326
Alw21I	GWGCWC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	3 cut(s)	103, 323, 326
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	360
AvaII	GGWCC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	3 cut(s)	115, 313, 335
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	108
BciVI	GTATCC	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	4 cut(s)	104, 324, 327, 346
BlsI	GCNGC	4 cut(s)	105, 325, 328, 347
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	3 cut(s)	115, 313, 335
BseYI	CCCAGC	1 cut(s)	202
BshFI	GGCC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	346
BspANI	GGCC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	402
BstMBI	GATC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	2 cut(s)	250, 382
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	3 cut(s)	115, 313, 335
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	260
CviAII	CATG	2 cut(s)	247, 379
CviJI	RGCY	9 cut(s)	34, 76, 97, 106, 202, 238, 326, 345, 385
CviKI_1	RGCY	9 cut(s)	34, 76, 97, 106, 202, 238, 326, 345, 385
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco32I	GATATC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	250, 382
FatI	CATG	2 cut(s)	246, 378
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	104, 324, 327, 346
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	4 cut(s)	104, 324, 327, 346
GluI	GCNGC	4 cut(s)	104, 324, 327, 346
GsaI	CCCAGC	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	345
Hin1II	CATG	2 cut(s)	250, 382
HinfI	GANTC	1 cut(s)	157
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188III	TCNNGA	2 cut(s)	67, 140
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	2 cut(s)	201, 375
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	5 cut(s)	4, 59, 103, 152, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	446
Hsp92II	CATG	2 cut(s)	250, 382
Kzo9I	GATC	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	7 cut(s)	90, 93, 120, 184, 188, 264, 276
Lsp1109I	GCAGC	3 cut(s)	115, 313, 335
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	446
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	2 cut(s)	155, 263
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	4 cut(s)	84, 122, 418, 454
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	3 cut(s)	228, 236, 300
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	285, 350
MspA1I	CMGCKG	2 cut(s)	34, 326
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	1 cut(s)	399
NlaIII	CATG	2 cut(s)	250, 382
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	250, 382
PkrI	GCNGC	4 cut(s)	105, 325, 328, 347
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	260
PvuII	CAGCTG	2 cut(s)	34, 326
SaqAI	TTAA	2 cut(s)	285, 350
SatI	GCNGC	4 cut(s)	104, 324, 327, 346
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	7 cut(s)	15, 36, 99, 204, 328, 373, 449
SfaNI	GCATC	1 cut(s)	156
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	4 cut(s)	84, 122, 418, 454
SsiI	CCGC	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	1 cut(s)	160
TasI	AATT	4 cut(s)	84, 122, 418, 454
TauI	GCSGC	1 cut(s)	348
Tru1I	TTAA	2 cut(s)	285, 350
Tru9I	TTAA	2 cut(s)	285, 350
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	3 cut(s)	103, 323, 326
TspRI	CASTG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	260
XceI	RCATGY	2 cut(s)	250, 382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.