Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

19780914 .. 19783990

Gene Structure 3077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAATATGAATTTTGTAGAACTGGATGTTTTTGGTGTCGACATAAGTCCATCTGAATCATTTCTGCATGGTGGTAAGCATCCAATTCTCACCGTGTTGTCAGCTGGGAACACTATGCATGTCTTTGTCAATGACCAGCTCTCAGGATCAACTTATGGGACTCTGCAAGACCTGAGATTCACTTTTACAGGAGATGTAAACATGCATGCTGGTGTGAATAAATTTTTGCTTCTAAGTGTAGCTGTTGGATTACCGAACAATGGTCCTCACTTTGAGACATGGAACTTGGGAGTACTGGGACCAGTTGTTCTACAAGGATTAGATCAAGGAAGTCGAGATTTATCGGGGCAGATATGGTCATACAAGGTTGGGCTAAACGGAGAATCCATGAATCTCGGATCTCCAACTTCCACCTCTGCAGTGAATTGGACAAGGGTGTTTATAAGGACACAGAATCAACATCCATTGACTTGGTATAAGGCCAATTTTAATGCACCTGAAGGGGACGAGCCTTTGGCTTTGGACATGGGGAGCATGGGGAAGGGTGAAGTACGGATAAATGGGGGGAACATTGGAAGATACTGGACTGTTCATGCTAATGGTAATTGCAGCGCGTGCAGTTATTTTAGTACATTCAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCAACTCAACAATGGTATCATGTTCCTCGATCTTGGCTCAAGCCATCCCAAAATCTGTTGGTGGTTTCTGAGAAGCTTGCTGGCGATTTTACAAAGATTGATCTTCTGAAAGTCACCCACGTGTTGAGAAATGGCAGACCAAGAACCGAGGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

275

Amino Acids

30.33

Weight (kDa)

7.75

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	156 - 241	1e-25	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	614
AclWI	GGATC	2 cut(s)	154, 406
AcsI	RAATTY	2 cut(s)	10, 221
AcuI	CTGAAG	1 cut(s)	519
AcvI	CACGTG	1 cut(s)	790
AfaI	GTAC	3 cut(s)	294, 552, 631
AfiI	CCNNNNNNNGG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	789
AleI	CACNNNNGTG	1 cut(s)	788
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	4 cut(s)	104, 139, 242, 745
AluI	AGCT	4 cut(s)	104, 139, 242, 745
Alw26I	GTCTC	2 cut(s)	269, 668
AlwI	GGATC	2 cut(s)	154, 406
AoxI	GGCC	1 cut(s)	480
ApeKI	GCWGC	1 cut(s)	609
ApoI	RAATTY	2 cut(s)	10, 221
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	2 cut(s)	263, 299
AsuHPI	GGTGA	3 cut(s)	82, 557, 775
AvaII	GGWCC	2 cut(s)	263, 299
BaeI	ACNNNNGTAYC	2 cut(s)	668, 701
BbrPI	CACGTG	1 cut(s)	790
BbvI	GCAGC	1 cut(s)	621
BccI	CCATC	2 cut(s)	58, 721
BcoDI	GTCTC	2 cut(s)	269, 668
BfmI	CTRYAG	1 cut(s)	417
BisI	GCNGC	1 cut(s)	610
BlsI	GCNGC	1 cut(s)	611
BmcAI	AGTACT	1 cut(s)	294
Bme18I	GGWCC	2 cut(s)	263, 299
BmgT120I	GGNCC	2 cut(s)	263, 299
BmiI	GGNNCC	1 cut(s)	300
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	305
BoxI	GACNNNNGTC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	692
BsaAI	YACGTR	1 cut(s)	790
BsaJI	CCNNGG	1 cut(s)	816
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	4 cut(s)	27, 300, 302, 587
BseDI	CCNNGG	1 cut(s)	816
BseGI	GGATG	4 cut(s)	31, 79, 460, 713
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	3 cut(s)	156, 164, 729
BseNI	ACTGG	4 cut(s)	27, 300, 302, 587
BseXI	GCAGC	1 cut(s)	621
BseYI	CCCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	637
Bsh1236I	CGCG	1 cut(s)	614
BshFI	GGCC	1 cut(s)	482
BslFI	GGGAC	3 cut(s)	172, 312, 518
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	2 cut(s)	269, 668
BsmFI	GGGAC	3 cut(s)	172, 312, 518
BsnI	GGCC	1 cut(s)	482
Bsp143I	GATC	5 cut(s)	146, 322, 398, 698, 769
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	3 cut(s)	155, 165, 730
BspFNI	CGCG	1 cut(s)	614
BspLI	GGNNCC	1 cut(s)	300
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	2 cut(s)	154, 406
BsrI	ACTGG	4 cut(s)	27, 300, 302, 587
BssECI	CCNNGG	1 cut(s)	816
BssMI	GATC	5 cut(s)	146, 322, 398, 698, 769
Bst4CI	ACNGT	2 cut(s)	94, 589
BstAPI	GCANNNNNTGC	1 cut(s)	615
BstBAI	YACGTR	1 cut(s)	790
BstC8I	GCNNGC	4 cut(s)	207, 616, 747, 751
BstDEI	CTNAG	4 cut(s)	142, 173, 233, 738
BstF5I	GGATG	4 cut(s)	31, 79, 460, 713
BstFNI	CGCG	1 cut(s)	614
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	5 cut(s)	149, 325, 401, 701, 772
BstMAI	GTCTC	2 cut(s)	269, 668
BstMBI	GATC	5 cut(s)	146, 322, 398, 698, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	615
BstNSI	RCATGY	3 cut(s)	122, 205, 209
BstPAI	GACNNNNGTC	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	614
BstV1I	GCAGC	1 cut(s)	621
BstX2I	RGATCY	1 cut(s)	398
BstXI	CCANNNNNNTGG	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	482
BtsCI	GGATG	4 cut(s)	31, 79, 460, 713
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	4 cut(s)	207, 616, 747, 751
CfoI	GCGC	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	263, 299
Csp6I	GTAC	3 cut(s)	293, 551, 630
CviQI	GTAC	3 cut(s)	293, 551, 630
DdeI	CTNAG	4 cut(s)	142, 173, 233, 738
DpnI	GATC	5 cut(s)	148, 324, 400, 700, 771
DpnII	GATC	5 cut(s)	146, 322, 398, 698, 769
Eco47I	GGWCC	2 cut(s)	263, 299
Eco57I	CTGAAG	1 cut(s)	519
Eco72I	CACGTG	1 cut(s)	790
EcoT22I	ATGCAT	2 cut(s)	120, 207
FaqI	GGGAC	3 cut(s)	172, 312, 518
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	610
FokI	GGATG	4 cut(s)	38, 66, 447, 700
Fsp4HI	GCNGC	1 cut(s)	610
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	1 cut(s)	610
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	482
HhaI	GCGC	1 cut(s)	614
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	6 cut(s)	56, 160, 177, 383, 391, 454
HphI	GGTGA	3 cut(s)	82, 557, 775
Hpy166II	GTNNAC	2 cut(s)	40, 199
Hpy188I	TCNGA	4 cut(s)	55, 398, 739, 777
Hpy188III	TCNNGA	3 cut(s)	144, 335, 637
Hpy8I	GTNNAC	2 cut(s)	40, 199
HpyAV	CCTTC	2 cut(s)	494, 535
HpyCH4III	ACNGT	2 cut(s)	94, 589
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	8 cut(s)	67, 118, 166, 205, 419, 494, 609, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	615
HpyF3I	CTNAG	4 cut(s)	142, 173, 233, 738
HpySE526I	ACGT	1 cut(s)	789
HspAI	GCGC	1 cut(s)	612
Kzo9I	GATC	5 cut(s)	146, 322, 398, 698, 769
LmnI	GCTCC	1 cut(s)	531
Lsp1109I	GCAGC	1 cut(s)	621
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	5 cut(s)	148, 324, 400, 700, 771
MboI	GATC	5 cut(s)	146, 322, 398, 698, 769
MboII	GAAGA	2 cut(s)	588, 764
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	7 cut(s)	10, 84, 221, 424, 484, 604, 653
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	3 cut(s)	226, 428, 691
MnlI	CCTC	4 cut(s)	276, 424, 705, 811
Mph1103I	ATGCAT	2 cut(s)	120, 207
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	2 cut(s)	489, 642
MslI	CAYNNNNRTG	3 cut(s)	210, 597, 788
MspA1I	CMGCKG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	614
MwoI	GCNNNNNNNGC	1 cut(s)	615
NdeII	GATC	5 cut(s)	146, 322, 398, 698, 769
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	2 cut(s)	120, 207
NspI	RCATGY	3 cut(s)	122, 205, 209
OliI	CACNNNNGTG	1 cut(s)	788
PaeI	GCATGC	1 cut(s)	209
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	5 cut(s)	56, 177, 383, 391, 454
PkrI	GCNGC	1 cut(s)	611
PleI	GAGTC	1 cut(s)	154
PmaCI	CACGTG	1 cut(s)	790
PmlI	CACGTG	1 cut(s)	790
PpsI	GAGTC	1 cut(s)	154
Ppu21I	YACGTR	1 cut(s)	790
PshAI	GACNNNNGTC	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	443
PspCI	CACGTG	1 cut(s)	790
PspFI	CCCAGC	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	263, 299
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	3 cut(s)	294, 552, 631
RsaNI	GTAC	3 cut(s)	293, 551, 630
RseI	CAYNNNNRTG	3 cut(s)	210, 597, 788
SalI	GTCGAC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	489, 642
SatI	GCNGC	1 cut(s)	610
Sau3AI	GATC	5 cut(s)	146, 322, 398, 698, 769
Sau96I	GGNCC	2 cut(s)	263, 299
ScaI	AGTACT	1 cut(s)	294
SchI	GAGTC	1 cut(s)	154
SetI	ASST	9 cut(s)	106, 141, 174, 244, 369, 416, 499, 747, 792
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	2 cut(s)	263, 299
SmiMI	CAYNNNNRTG	3 cut(s)	210, 597, 788
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	7 cut(s)	10, 84, 221, 424, 484, 604, 653
TaaI	ACNGT	2 cut(s)	94, 589
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	3 cut(s)	39, 334, 697
TasI	AATT	7 cut(s)	10, 84, 221, 424, 484, 604, 653
TatI	WGTACW	2 cut(s)	292, 629
TfiI	GAWTC	5 cut(s)	56, 177, 383, 391, 454
Tru1I	TTAA	2 cut(s)	489, 642
Tru9I	TTAA	2 cut(s)	489, 642
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	1 cut(s)	609
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	4 cut(s)	17, 23, 404, 581
TspGWI	ACGGA	2 cut(s)	393, 568
TspRI	CASTG	1 cut(s)	426
VpaK11BI	GGWCC	2 cut(s)	263, 299
XapI	RAATTY	2 cut(s)	10, 221
XceI	RCATGY	3 cut(s)	122, 205, 209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	678
XmiI	GTMKAC	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	294
Zsp2I	ATGCAT	2 cut(s)	120, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.