Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

58847016 .. 58849192

Gene Structure 2177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034997

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTGACTTTCAATGACCTAAATTGTGTGATCCCTGCTTATTCCATCAGCGTCCTTCCAGACTGCGAAAATGTTGTATTCAACACTGCCAAAGTAAATGAAATAAACAATGGTGATACAACTCTCACAGTCATTGGTTTCTTAGATCAGTTGAACATCACTAGAGACTCCAATGATTATCTATGGTACACCACCAATCCATCTGAATCATTTCTACGTGGTGGTAAGCATCCAATTCTCACTATGTTGTCAGCTGGGAACGCTATGCATGTCTTTGTCAATGACCAACTCTCAGTTGTTCTACAAGGATTAGATCAAGGAAGTAGAGATTTATCAGGGCAGATATGGTCATACAAGGTTGGGCTAAATGGAGAATCCATGAATCTCGGTTCTCCAAGTTCCACCTCTACAGTGAATTGGACGAGGGTGTCTAAGGACACAGAATCAACAGCCAATGACTTGCAATTTTGGATAACGGTGCTACTTGAACCCTCAGTCAATTTTGATGCACCTGAAGGGGACGAGCCTTTGGCTTTGGACATGGGGAGCATGGGGAAGGGTGAAGTATCATGTTCCTTGGTCTTGCCTCAAGCCATCCCAAAATCTGTTGGTGGTTTTGAGGAGCTTCTTGCGATGTTACAAAGATTGATCTTCTTAAAGTCACCCACGTGTGGAGAAATGGCAGACCAAGAACTACGGCAAACTGAAAGAGCAAAAGAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

242

Amino Acids

26.33

Weight (kDa)

4.38

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHD	PF17834	2 - 32	6.5e-10	Beta-sandwich domain in beta galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	427
AclWI	GGATC	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	534
AcvI	CACGTG	1 cut(s)	669
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	671
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	4 cut(s)	13, 82, 154, 488
AleI	CACNNNNGTG	1 cut(s)	667
AluBI	AGCT	2 cut(s)	254, 625
AluI	AGCT	2 cut(s)	254, 625
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	210
AsuHPI	GGTGA	4 cut(s)	16, 125, 572, 654
BbrPI	CACGTG	1 cut(s)	669
BccI	CCATC	3 cut(s)	53, 208, 602
BceAI	ACGGC	1 cut(s)	713
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	408
BmsI	GCATC	2 cut(s)	238, 496
BpuEI	CTTGAG	1 cut(s)	573
BsaAI	YACGTR	2 cut(s)	218, 669
BsaJI	CCNNGG	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	2 cut(s)	229, 594
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMII	CTCAG	2 cut(s)	306, 507
BseRI	GAGGAG	1 cut(s)	635
BseYI	CCCAGC	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmAI	GTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	533
Bsp143I	GATC	4 cut(s)	30, 145, 313, 648
BspCNI	CTCAG	2 cut(s)	305, 506
BspPI	GGATC	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	4 cut(s)	30, 145, 313, 648
BssT1I	CCWWGG	1 cut(s)	576
Bst4CI	ACNGT	3 cut(s)	130, 412, 478
BstBAI	YACGTR	2 cut(s)	218, 669
BstDEI	CTNAG	4 cut(s)	142, 292, 432, 493
BstF5I	GGATG	2 cut(s)	229, 594
BstKTI	GATC	4 cut(s)	33, 148, 316, 651
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	4 cut(s)	30, 145, 313, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 719
BstNSI	RCATGY	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	647
BtsCI	GGATG	2 cut(s)	229, 594
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 417
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	5 cut(s)	269, 379, 541, 550, 570
CviJI	RGCY	8 cut(s)	254, 364, 452, 526, 533, 593, 625, 722
CviKI_1	RGCY	8 cut(s)	254, 364, 452, 526, 533, 593, 625, 722
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	142, 292, 432, 493
DpnI	GATC	4 cut(s)	32, 147, 315, 650
DpnII	GATC	4 cut(s)	30, 145, 313, 648
DrdI	GACNNNNNNGTC	1 cut(s)	427
DseDI	GACNNNNNNGTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	534
Eco72I	CACGTG	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	5 cut(s)	272, 382, 544, 553, 573
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	5 cut(s)	268, 378, 540, 549, 569
FokI	GGATG	2 cut(s)	216, 581
FspBI	CTAG	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	258
HgaI	GACGC	1 cut(s)	40
Hin1II	CATG	5 cut(s)	272, 382, 544, 553, 573
HinfI	GANTC	5 cut(s)	167, 206, 374, 382, 443
HphI	GGTGA	4 cut(s)	16, 125, 572, 654
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	189
HpyAV	CCTTC	3 cut(s)	65, 509, 550
HpyCH4III	ACNGT	3 cut(s)	130, 412, 478
HpyCH4IV	ACGT	2 cut(s)	217, 668
HpyCH4V	TGCA	3 cut(s)	268, 463, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 719
HpyF3I	CTNAG	4 cut(s)	142, 292, 432, 493
HpySE526I	ACGT	2 cut(s)	217, 668
Hsp92II	CATG	5 cut(s)	272, 382, 544, 553, 573
Kzo9I	GATC	4 cut(s)	30, 145, 313, 648
LmnI	GCTCC	2 cut(s)	546, 622
LpnPI	CCDG	5 cut(s)	48, 72, 240, 321, 525
LweI	GCATC	2 cut(s)	238, 496
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	2 cut(s)	217, 668
MaeIII	GTNAC	3 cut(s)	4, 636, 660
MalI	GATC	4 cut(s)	32, 147, 315, 650
MboI	GATC	4 cut(s)	30, 145, 313, 648
MboII	GAAGA	1 cut(s)	643
MluCI	AATT	5 cut(s)	22, 234, 415, 464, 499
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	5 cut(s)	415, 417, 502, 597, 613
Mph1103I	ATGCAT	1 cut(s)	270
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	1 cut(s)	656
MslI	CAYNNNNRTG	1 cut(s)	667
MspA1I	CMGCKG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	260, 719
NdeII	GATC	4 cut(s)	30, 145, 313, 648
NlaIII	CATG	5 cut(s)	272, 382, 544, 553, 573
NmuCI	GTSAC	2 cut(s)	4, 660
NsiI	ATGCAT	1 cut(s)	270
NspI	RCATGY	1 cut(s)	272
OliI	CACNNNNGTG	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	4 cut(s)	206, 374, 382, 443
PleI	GAGTC	1 cut(s)	161
PmaCI	CACGTG	1 cut(s)	669
PmlI	CACGTG	1 cut(s)	669
PpsI	GAGTC	1 cut(s)	161
Ppu21I	YACGTR	2 cut(s)	218, 669
PspCI	CACGTG	1 cut(s)	669
PspFI	CCCAGC	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	667
SaqAI	TTAA	1 cut(s)	656
Sau3AI	GATC	4 cut(s)	30, 145, 313, 648
SchI	GAGTC	1 cut(s)	161
SetI	ASST	8 cut(s)	21, 220, 256, 360, 407, 514, 627, 671
SfaNI	GCATC	2 cut(s)	238, 496
SfcI	CTRYAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	667
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
Sse9I	AATT	5 cut(s)	22, 234, 415, 464, 499
SspMI	CTAG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	3 cut(s)	130, 412, 478
TaiI	ACGT	2 cut(s)	220, 671
TasI	AATT	5 cut(s)	22, 234, 415, 464, 499
TfiI	GAWTC	4 cut(s)	206, 374, 382, 443
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TscAI	CASTG	2 cut(s)	91, 417
TseFI	GTSAC	2 cut(s)	4, 660
Tsp45I	GTSAC	2 cut(s)	4, 660
TspDTI	ATGAA	2 cut(s)	114, 395
TspRI	CASTG	2 cut(s)	91, 417
XceI	RCATGY	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.