Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

73891052 .. 73894136

Gene Structure 3085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG465100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTACAGACAAAGAAGAGGTTTACTTGAATCTCGTACTTGAATTTGTTCCTGAAACTGTTTACCGTATCCCAAGGAACTATAGCAAGATCAACCAGCGGATGCCTTTAATATATATCTGTCGGGCACTTGCTTTTATACATAATGGCATTGGCATCTGTCACCGTGACATCAAGCCTCAAAATTTACTTGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCCTGGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGATTGTGTAATGAGTCGATTGATGCCTAGAAAGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAACACTGTCTTATCCCTTTGAGGCTTAGAGGCATGTGCTCATATGGACCAGTTTCTCTTCTCTCTGGTCTTAACCCTCATCCATTACACTTGTTTCTCCATTTCTTTGCAGCTGCCATCTATGGTGTTGGCCGCTTAATGCTTCCGTTCCCTTCACCTAAACGCATGTGGCTTGGGTTTCTATTGATCTTGAGTGCATCACACATCATATTCAGTCTCTTAAGCAATCAAATGAAGCACTATGTCATGCTAAATAAAAGTTTAGGGTCAACCACTGATTTAATCATATGGTATATCACTCCTAGAGCGTGTGCAATTATGTTGGTATCATGTTCCTCGGTATTGGCTCAAGCCATCCCAAAATCTGTTGGTGGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

274

Amino Acids

30.99

Weight (kDa)

9.35

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 103	1.2e-17	Protein kinase domain
SE	PF08491	150 - 205	4.7e-11	Squalene epoxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	151, 577
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	2 cut(s)	95, 235
AfaI	GTAC	1 cut(s)	90
AflII	CTTAAG	1 cut(s)	664
AgsI	TTSAA	4 cut(s)	54, 82, 95, 374
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	3 cut(s)	265, 328, 557
AluI	AGCT	3 cut(s)	265, 328, 557
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	574
ApeKI	GCWGC	3 cut(s)	334, 554, 557
ApoI	RAATTY	2 cut(s)	95, 235
Asp700I	GAANNNNTTC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	206, 591
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	3 cut(s)	346, 544, 566
BccI	CCATC	3 cut(s)	427, 569, 806
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	2 cut(s)	131, 435
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	2 cut(s)	402, 747
BfmI	CTRYAG	2 cut(s)	57, 133
BfrI	CTTAAG	1 cut(s)	664
BfuI	GTATCC	2 cut(s)	131, 435
BisI	GCNGC	4 cut(s)	335, 555, 558, 577
BlsI	GCNGC	4 cut(s)	336, 556, 559, 578
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	491
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	4 cut(s)	144, 216, 387, 650
BpuEI	CTTGAG	3 cut(s)	319, 655, 777
BsaJI	CCNNGG	3 cut(s)	125, 338, 780
Bse1I	ACTGG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	125, 338, 780
BseGI	GGATG	3 cut(s)	159, 523, 798
BseMI	GCAATG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	3 cut(s)	346, 544, 566
BshFI	GGCC	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	665
BsnI	GGCC	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	181, 485
Bsp143I	GATC	3 cut(s)	13, 141, 630
BspACI	CCGC	2 cut(s)	151, 577
BspANI	GGCC	1 cut(s)	576
BspPI	GGATC	1 cut(s)	21
BspTI	CTTAAG	1 cut(s)	664
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	3 cut(s)	125, 338, 780
BssMI	GATC	3 cut(s)	13, 141, 630
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	4 cut(s)	112, 119, 218, 452
Bst6I	CTCTTC	2 cut(s)	63, 507
BstAFI	CTTAAG	1 cut(s)	664
BstDEI	CTNAG	1 cut(s)	470
BstF5I	GGATG	3 cut(s)	159, 523, 798
BstKTI	GATC	3 cut(s)	16, 144, 633
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	3 cut(s)	13, 141, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	2 cut(s)	481, 613
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	2 cut(s)	57, 133
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	3 cut(s)	346, 544, 566
BsuI	GTATCC	2 cut(s)	131, 435
BsuRI	GGCC	1 cut(s)	576
BtsCI	GGATG	3 cut(s)	159, 523, 798
BtsIMutI	CAGTG	2 cut(s)	448, 717
Cfr13I	GGNCC	1 cut(s)	491
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	4 cut(s)	478, 610, 691, 774
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	3 cut(s)	15, 143, 632
DpnII	GATC	3 cut(s)	13, 141, 630
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	2 cut(s)	63, 507
EarI	CTCTTC	2 cut(s)	63, 507
Eco130I	CCWWGG	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	4 cut(s)	481, 613, 694, 777
FatI	CATG	4 cut(s)	477, 609, 690, 773
FauNDI	CATATG	2 cut(s)	487, 731
Fnu4HI	GCNGC	4 cut(s)	335, 555, 558, 577
FokI	GGATG	3 cut(s)	166, 510, 785
Fsp4HI	GCNGC	4 cut(s)	335, 555, 558, 577
FspBI	CTAG	2 cut(s)	402, 747
GluI	GCNGC	4 cut(s)	335, 555, 558, 577
HaeIII	GGCC	1 cut(s)	576
Hin1II	CATG	4 cut(s)	481, 613, 694, 777
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HinfI	GANTC	2 cut(s)	82, 388
HphI	GGTGA	2 cut(s)	206, 591
Hpy166II	GTNNAC	3 cut(s)	76, 115, 714
Hpy188III	TCNNGA	4 cut(s)	104, 298, 371, 634
Hpy8I	GTNNAC	3 cut(s)	76, 115, 714
HpyAV	CCTTC	2 cut(s)	432, 606
HpyCH4III	ACNGT	4 cut(s)	112, 119, 218, 452
HpyCH4V	TGCA	6 cut(s)	4, 290, 334, 554, 641, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	1 cut(s)	470
Hsp92II	CATG	4 cut(s)	481, 613, 694, 777
Kzo9I	GATC	3 cut(s)	13, 141, 630
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	7 cut(s)	117, 161, 321, 324, 351, 495, 507
Lsp1109I	GCAGC	3 cut(s)	346, 544, 566
LweI	GCATC	4 cut(s)	144, 216, 387, 650
MaeI	CTAG	2 cut(s)	402, 747
MaeIII	GTNAC	2 cut(s)	212, 218
MalI	GATC	3 cut(s)	15, 143, 632
MboI	GATC	3 cut(s)	13, 141, 630
MboII	GAAGA	3 cut(s)	80, 386, 494
MhlI	GDGCHC	2 cut(s)	181, 485
MluCI	AATT	5 cut(s)	95, 235, 315, 353, 759
MlyI	GAGTC	1 cut(s)	397
MnlI	CCTC	6 cut(s)	64, 240, 459, 467, 531, 790
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	5 cut(s)	161, 516, 581, 665, 725
MspA1I	CMGCKG	3 cut(s)	151, 265, 557
MspCI	CTTAAG	1 cut(s)	664
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	334
NdeI	CATATG	2 cut(s)	487, 731
NdeII	GATC	3 cut(s)	13, 141, 630
NlaIII	CATG	4 cut(s)	481, 613, 694, 777
NmuCI	GTSAC	2 cut(s)	212, 218
NspI	RCATGY	2 cut(s)	481, 613
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	336, 556, 559, 578
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	491
PvuII	CAGCTG	2 cut(s)	265, 557
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SaqAI	TTAA	5 cut(s)	161, 516, 581, 665, 725
SatI	GCNGC	4 cut(s)	335, 555, 558, 577
Sau3AI	GATC	3 cut(s)	13, 141, 630
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	181, 485
SetI	ASST	5 cut(s)	75, 267, 330, 559, 604
SfaNI	GCATC	4 cut(s)	144, 216, 387, 650
SfcI	CTRYAG	2 cut(s)	57, 133
SinI	GGWCC	1 cut(s)	491
SmlI	CTYRAG	4 cut(s)	298, 634, 664, 792
SmoI	CTYRAG	4 cut(s)	298, 634, 664, 792
Sse9I	AATT	5 cut(s)	95, 235, 315, 353, 759
SsiI	CCGC	2 cut(s)	151, 577
SspMI	CTAG	2 cut(s)	402, 747
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	4 cut(s)	112, 119, 218, 452
TaqI	TCGA	1 cut(s)	391
TasI	AATT	5 cut(s)	95, 235, 315, 353, 759
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	5 cut(s)	161, 516, 581, 665, 725
Tru9I	TTAA	5 cut(s)	161, 516, 581, 665, 725
TscAI	CASTG	2 cut(s)	455, 724
TseFI	GTSAC	2 cut(s)	212, 218
TseI	GCWGC	3 cut(s)	334, 554, 557
Tsp45I	GTSAC	2 cut(s)	212, 218
TspDTI	ATGAA	1 cut(s)	692
TspGWI	ACGGA	1 cut(s)	579
TspRI	CASTG	2 cut(s)	455, 724
Vha464I	CTTAAG	1 cut(s)	664
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	2 cut(s)	95, 235
XceI	RCATGY	2 cut(s)	481, 613
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	2 cut(s)	402, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.