Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Forward (+)

41885734 .. 41888047

Gene Structure 2314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013821

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAATTGGATAGTGAACCTAATATAATTGATGGTGCAGGTGCTGAAACAGGACATGTAATACGCGCAACTGTTGGCGGTCGAGGTGGTCAATCTAGACAGACAGTGAGTTATATTTCAGAACATGTGGTTGGAATTGGCTTTTTTGGGGTTGTTTTCCAGGCGAAATGTAGAGAAACTGGAGAGATTGTTGCTATCAAGAAGGTTCTCCAAGACAAGCGTTACAAGAACCGGGAGTTACAGATTATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTACAGACAGAGAAGAGGTTTACTTGAATCTCGTCCTTGAATTTGTTTCTGAAACTGTTACCGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCCTGGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGATTGTGCAAATGAGTCGATTGATGTCCAGAAAGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAACACTGTCTTATCCCTTGGAAGCTTGGAGGCATCTGCTTATATGGACCAGTTTCTCTTCTTTCTGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

213

Amino Acids

23.83

Weight (kDa)

5.81

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	39 - 118	1.2e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 117	4e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	29
AccII	CGCG	1 cut(s)	66
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	341
AflIII	ACRYGT	2 cut(s)	55, 124
AgsI	TTSAA	4 cut(s)	300, 328, 341, 494
AjnI	CCWGG	2 cut(s)	159, 457
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	3 cut(s)	385, 448, 590
AluI	AGCT	3 cut(s)	385, 448, 590
AlwI	GGATC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	612
AsuC2I	CCSGG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	2 cut(s)	26, 548
BcgI	CGANNNNNNTGC	2 cut(s)	492, 526
BciT130I	CCWGG	2 cut(s)	161, 459
BciVI	GTATCC	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme1390I	CCNGG	3 cut(s)	161, 233, 459
Bme18I	GGWCC	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	612
BmrFI	CCNGG	3 cut(s)	161, 233, 459
BmsI	GCATC	1 cut(s)	607
BpmI	CTGGAG	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	458, 582
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse1I	ACTGG	2 cut(s)	184, 615
Bse3DI	GCAATG	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	161, 459
BseDI	CCNNGG	2 cut(s)	458, 582
BseMI	GCAATG	1 cut(s)	286
BseNI	ACTGG	2 cut(s)	184, 615
BseXI	GCAGC	1 cut(s)	466
BsgI	GTGCAG	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	66
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	184, 615
BssECI	CCNNGG	2 cut(s)	458, 582
BssMI	GATC	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	161, 459
Bst4CI	ACNGT	5 cut(s)	73, 106, 358, 364, 573
Bst6I	CTCTTC	2 cut(s)	309, 628
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstNI	CCWGG	2 cut(s)	161, 459
BstNSI	RCATGY	2 cut(s)	59, 128
BstSCI	CCNGG	3 cut(s)	159, 231, 457
BstSFI	CTRYAG	1 cut(s)	303
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	556
BtsIMutI	CAGTG	2 cut(s)	111, 569
BveI	ACCTGC	1 cut(s)	29
CaiI	CAGNNNCTG	1 cut(s)	44
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	612
CviAII	CATG	2 cut(s)	56, 125
CviJI	RGCY	6 cut(s)	141, 385, 427, 448, 457, 590
CviKI_1	RGCY	6 cut(s)	141, 385, 427, 448, 457, 590
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	309, 628
EarI	CTCTTC	2 cut(s)	309, 628
Eco130I	CCWWGG	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	612
EcoRII	CCWGG	2 cut(s)	159, 457
EcoRV	GATATC	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	2 cut(s)	59, 128
FaiI	YATR	8 cut(s)	26, 57, 114, 126, 248, 540, 608, 610
FatI	CATG	2 cut(s)	55, 124
Fnu4HI	GCNGC	1 cut(s)	455
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	455
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	1 cut(s)	232
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	59, 128
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	2 cut(s)	328, 509
HpaII	CCGG	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	17, 322
Hpy188I	TCNGA	2 cut(s)	121, 352
Hpy188III	TCNNGA	5 cut(s)	96, 199, 418, 491, 523
Hpy8I	GTNNAC	2 cut(s)	17, 322
HpyAV	CCTTC	2 cut(s)	196, 553
HpyCH4III	ACNGT	5 cut(s)	73, 106, 358, 364, 573
HpyCH4V	TGCA	5 cut(s)	38, 250, 410, 454, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
Hsp92II	CATG	2 cut(s)	59, 128
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	3 cut(s)	221, 237, 358
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	326, 506, 615
MluCI	AATT	6 cut(s)	5, 27, 135, 341, 435, 473
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	2 cut(s)	112, 237
MnlI	CCTC	3 cut(s)	77, 310, 588
MseI	TTAA	1 cut(s)	637
MspA1I	CMGCKG	1 cut(s)	385
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	3 cut(s)	161, 233, 459
MvaI	CCWGG	2 cut(s)	161, 459
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	454
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	59, 128
NspI	RCATGY	2 cut(s)	59, 128
PaqCI	CACCTGC	1 cut(s)	29
PciI	ACATGT	2 cut(s)	55, 124
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	456
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PscI	ACATGT	2 cut(s)	55, 124
Psp6I	CCWGG	2 cut(s)	159, 457
PspGI	CCWGG	2 cut(s)	159, 457
PspPI	GGNCC	1 cut(s)	612
PstNI	CAGNNNCTG	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	637
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	3 cut(s)	161, 233, 459
SetI	ASST	8 cut(s)	22, 43, 88, 207, 321, 387, 450, 592
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	6 cut(s)	5, 27, 135, 341, 435, 473
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	159, 231, 457
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	5 cut(s)	73, 106, 358, 364, 573
TaqI	TCGA	2 cut(s)	82, 512
TasI	AATT	6 cut(s)	5, 27, 135, 341, 435, 473
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	637
Tru9I	TTAA	1 cut(s)	637
TscAI	CASTG	2 cut(s)	111, 576
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	111, 576
VpaK11BI	GGWCC	1 cut(s)	612
XapI	RAATTY	1 cut(s)	341
XbaI	TCTAGA	1 cut(s)	95
XceI	RCATGY	2 cut(s)	59, 128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.