Rh5DG354200

beta-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
49204425 .. 49205654
1230 bp
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UTR
Exon/CDS
Intron
Rh5DG354200.1

Sequence Viewer

Length: 402 bp
ATGGGCTGTAGGATTACCGTTTGTATTTGGACGAGGGTGTCTATAAGGACACAGAATCAACAGCCACTAACTTTGTATAAGGCCAATTTTGATGCACCTGAAGGGGACGAGCCTTTGGCTTTGGACATGGGGAGCATGGGGAAGGGTGAAGTACGGATAACATTGGAAGATACTGGACTGTTCATGCTAATGGTAACTGCAGCGCGTGCTGTTATTTTGGTACATTCAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCAACTCAACAATGGTATCATGTTCCTCGGTCTTGGGTCAAGCCACCCCAAAATATGTTGGTGGTATATGAGGAGGTTGATTGATATTCTGAAAGTTACCCATGTGTTGAGAAATGGCAGACCAAGAATCAAGGCAAACTGA

Protein Analysis

133

Amino Acids

14.84

Weight (kDa)

9.72

Isoelectric Point (pI)

21.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BetaGal_gal-bd PF21467 23 - 53 2e-06 Beta-galactosidase, galactose-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 37
AccII CGCG 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 2 cut(s) 153, 222
Alw26I GTCTC 1 cut(s) 259
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 158
BaeI ACNNNNGTAYC 2 cut(s) 259, 292
BbvI GCAGC 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 259
BfmI CTRYAG 2 cut(s) 7, 198
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmsI GCATC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 83
BslFI GGGAC 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 83
BspANI GGCC 1 cut(s) 83
BspFNI CGCG 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 202
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 19, 180
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 207
BstFNI CGCG 1 cut(s) 205
BstHHI GCGC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstSFI CTRYAG 2 cut(s) 7, 198
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 205
Csp6I GTAC 2 cut(s) 152, 221
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 5 cut(s) 127, 136, 184, 280, 362
CviJI RGCY 6 cut(s) 6, 64, 83, 112, 119, 303
CviKI_1 RGCY 6 cut(s) 6, 64, 83, 112, 119, 303
CviQI GTAC 2 cut(s) 152, 221
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 120
FaeI CATG 5 cut(s) 130, 139, 187, 283, 365
FaqI GGGAC 1 cut(s) 119
FatI CATG 5 cut(s) 126, 135, 183, 279, 361
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 83
HhaI GCGC 1 cut(s) 205
Hin1II CATG 5 cut(s) 130, 139, 187, 283, 365
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 2 cut(s) 55, 387
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 1 cut(s) 228
HpyAV CCTTC 2 cut(s) 95, 136
HpyCH4III ACNGT 2 cut(s) 19, 180
HpyCH4V TGCA 2 cut(s) 95, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
Hsp92II CATG 5 cut(s) 130, 139, 187, 283, 365
HspAI GCGC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 3 cut(s) 111, 159, 213
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 82
MaeIII GTNAC 2 cut(s) 193, 355
MboII GAAGA 1 cut(s) 179
MluCI AATT 2 cut(s) 85, 244
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 4 cut(s) 27, 296, 324, 327
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 188
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 206
NlaIII CATG 5 cut(s) 130, 139, 187, 283, 365
PfeI GAWTC 2 cut(s) 55, 387
PkrI GCNGC 1 cut(s) 202
PstI CTGCAG 1 cut(s) 202
RsaI GTAC 2 cut(s) 153, 222
RsaNI GTAC 2 cut(s) 152, 221
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 1 cut(s) 201
SetI ASST 2 cut(s) 100, 338
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 2 cut(s) 7, 198
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 2 cut(s) 85, 244
TaaI ACNGT 2 cut(s) 19, 180
TaqII GACCGA 1 cut(s) 278
TasI AATT 2 cut(s) 85, 244
TfiI GAWTC 2 cut(s) 55, 387
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 172
TspGWI ACGGA 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.