Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

25531997 .. 25532620

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18627

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCTCAAATCCTACCTGTGCATATTCAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCCTGGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGATTGTGCAATGAGTCGATTGATGCCCAGAAAGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAACACTGTCTTATCCCTTGGAGGCTTGGAGGCATCTGCTCATATGGACCAGTTTCTCTTCTCTCTGGTCTTAACCCTCGTCCATTACACTTGTTTCTCCATTTGTTTGCAGCTGCCATCTATGGTGTTGGCCGCTTAATGCTTCCGTTCCCTTCACCTAAACGCATGTGGCTTGGGTTTCTATTGATCTTGGTATGTCAAAGAAATTATTTACACTTCTTTCTTGTGTTCACGTTTGTCAATTATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

145

Amino Acids

16.56

Weight (kDa)

9.57

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SE	PF08491	64 - 119	4e-12	Squalene epoxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	2 cut(s)	70, 299
AluI	AGCT	2 cut(s)	70, 299
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	76, 296, 299
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	88, 286, 308
BccI	CCATC	2 cut(s)	169, 311
BciT130I	CCWGG	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	177
BisI	GCNGC	4 cut(s)	77, 297, 300, 319
BlsI	GCNGC	4 cut(s)	78, 298, 301, 320
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	129, 228
BpuEI	CTTGAG	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	80, 203
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	80, 203
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	88, 286, 308
BshFI	GGCC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	372
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	80, 203
BssMI	GATC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	249
BstKTI	GATC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	88, 286, 308
BsuI	GTATCC	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	34, 190
Cfr13I	GGNCC	1 cut(s)	233
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	7 cut(s)	49, 70, 79, 211, 299, 318, 358
CviKI_1	RGCY	7 cut(s)	49, 70, 79, 211, 299, 318, 358
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	79
EcoRV	GATATC	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	1 cut(s)	355
FaiI	YATR	9 cut(s)	23, 161, 229, 231, 309, 353, 382, 432, 436
FatI	CATG	1 cut(s)	351
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	77, 297, 300, 319
Fsp4HI	GCNGC	4 cut(s)	77, 297, 300, 319
GluI	GCNGC	4 cut(s)	77, 297, 300, 319
HaeIII	GGCC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	355
HinfI	GANTC	1 cut(s)	130
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188III	TCNNGA	2 cut(s)	40, 113
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	2 cut(s)	174, 348
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	5 cut(s)	21, 32, 76, 125, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	7 cut(s)	29, 63, 66, 93, 157, 237, 249
Lsp1109I	GCAGC	3 cut(s)	88, 286, 308
LweI	GCATC	2 cut(s)	129, 228
MaeII	ACGT	1 cut(s)	419
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	2 cut(s)	128, 236
MluCI	AATT	4 cut(s)	57, 95, 391, 427
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	3 cut(s)	201, 209, 273
MseI	TTAA	2 cut(s)	258, 323
MspA1I	CMGCKG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	1 cut(s)	355
NspI	RCATGY	1 cut(s)	355
PkrI	GCNGC	4 cut(s)	78, 298, 301, 320
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	258, 323
SatI	GCNGC	4 cut(s)	77, 297, 300, 319
Sau3AI	GATC	1 cut(s)	372
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	5 cut(s)	18, 72, 301, 346, 422
SfaNI	GCATC	2 cut(s)	129, 228
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	4 cut(s)	57, 95, 391, 427
SsiI	CCGC	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	1 cut(s)	133
TasI	AATT	4 cut(s)	57, 95, 391, 427
TauI	GCSGC	1 cut(s)	321
Tru1I	TTAA	2 cut(s)	258, 323
Tru9I	TTAA	2 cut(s)	258, 323
TscAI	CASTG	2 cut(s)	34, 197
TseI	GCWGC	3 cut(s)	76, 296, 299
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	2 cut(s)	34, 197
VpaK11BI	GGWCC	1 cut(s)	233
XceI	RCATGY	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.