Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006792.1

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

165983 .. 169276

Gene Structure 3294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006792.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgacctggcgtggacttatggggcgaagggaaggcaaagtggtgaggactctgtgggctactcatacaggtcaccaggtccttccagtacctgcaaggcaattattacattgcgcctctcttcatggtatgatggacttcgataaccttctcaacttcgagaacgacgacccactcctcaaccctctgctaagaaaaggtggatcttctcttctcttcgatttggtatttaggaaattggatgatattttgactgatttgtacaaggaagaaggcaagcttgttgaaaaggtggttaggaaagcaaagaacaatggtcctcactttgagacatggaacttgggagtactgggaccagttgttctacaaggattagatcaaggaagtagagatttaccagggcagatattgtcatgcaaggttgggctaaaccaagaatccatgaatctcggttctccaacttccacctctgcagtgaattggatgacggtgtctataaggacgcagaagaaacagccactgacttggtataaggccaattttgatgcatctgaaggggacgagcctttggctttggacatggggagcatggggaagggtgaagtatggatagcattggaagataatggactgttcatgctaatggtatcatgttcctcggtcttggctcaagccatcccaaaatctgttggtggtatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

233

Amino Acids

25.69

Weight (kDa)

6.52

Isoelectric Point (pI)

27.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	3 cut(s)	90, 263, 348
AgsI	TTSAA	1 cut(s)	287
AjnI	CCWGG	3 cut(s)	5, 75, 397
AloI	GAACNNNNNNTCC	2 cut(s)	345, 377
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	211
AlwNI	CAGNNNCTG	2 cut(s)	92, 520
AoxI	GGCC	1 cut(s)	534
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	79, 317, 353
AsuHPI	GGTGA	3 cut(s)	55, 65, 611
AvaII	GGWCC	3 cut(s)	79, 317, 353
BccI	CCATC	2 cut(s)	127, 683
BciT130I	CCWGG	3 cut(s)	7, 77, 399
BcoDI	GTCTC	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	348
Bme1390I	CCNGG	3 cut(s)	7, 77, 399
Bme18I	GGWCC	3 cut(s)	79, 317, 353
BmgT120I	GGNCC	3 cut(s)	79, 317, 353
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	3 cut(s)	7, 77, 399
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	535, 557
BmuI	ACTGGG	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	654
BsaJI	CCNNGG	2 cut(s)	398, 657
Bse1I	ACTGG	3 cut(s)	86, 354, 356
Bse3DI	GCAATG	1 cut(s)	109
BseBI	CCWGG	3 cut(s)	7, 77, 399
BseDI	CCNNGG	2 cut(s)	398, 657
BseGI	GGATG	3 cut(s)	247, 489, 675
BseMI	GCAATG	1 cut(s)	109
BseNI	ACTGG	3 cut(s)	86, 354, 356
BseRI	GAGGAG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	536
BslFI	GGGAC	2 cut(s)	366, 572
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	2 cut(s)	366, 572
BsnI	GGCC	1 cut(s)	536
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	203, 376
BspANI	GGCC	1 cut(s)	536
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	475
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	86, 354, 356
BssECI	CCNNGG	2 cut(s)	398, 657
BssMI	GATC	2 cut(s)	203, 376
Bst2UI	CCWGG	3 cut(s)	7, 77, 399
Bst4CI	ACNGT	2 cut(s)	490, 633
Bst6I	CTCTTC	3 cut(s)	126, 216, 221
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	191
BstEII	GGTNACC	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	247, 489, 675
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	2 cut(s)	206, 379
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	203, 376
BstNI	CCWGG	3 cut(s)	7, 77, 399
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	3 cut(s)	5, 75, 397
BstSFI	CTRYAG	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	247, 489, 675
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	480, 518
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	278
CaiI	CAGNNNCTG	2 cut(s)	92, 520
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	79, 317, 353
CseI	GACGC	1 cut(s)	511
CsiI	ACCWGGT	1 cut(s)	75
Csp6I	GTAC	3 cut(s)	89, 262, 347
CviAII	CATG	8 cut(s)	125, 333, 414, 442, 580, 589, 637, 651
CviJI	RGCY	9 cut(s)	59, 280, 427, 517, 536, 565, 572, 668, 674
CviKI_1	RGCY	9 cut(s)	59, 280, 427, 517, 536, 565, 572, 668, 674
CviQI	GTAC	3 cut(s)	89, 262, 347
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	2 cut(s)	205, 378
DpnII	GATC	2 cut(s)	203, 376
Eam1104I	CTCTTC	3 cut(s)	126, 216, 221
EarI	CTCTTC	3 cut(s)	126, 216, 221
Eco47I	GGWCC	3 cut(s)	79, 317, 353
Eco57I	CTGAAG	1 cut(s)	573
Eco91I	GGTNACC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	5, 75, 397
EcoT22I	ATGCAT	1 cut(s)	550
FaeI	CATG	8 cut(s)	128, 336, 417, 445, 583, 592, 640, 654
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	2 cut(s)	366, 572
FatI	CATG	8 cut(s)	124, 332, 413, 441, 579, 588, 636, 650
FokI	GGATG	3 cut(s)	254, 496, 662
GlaI	GCGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	536
HgaI	GACGC	1 cut(s)	511
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	8 cut(s)	128, 336, 417, 445, 583, 592, 640, 654
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	3 cut(s)	49, 437, 445
HphI	GGTGA	3 cut(s)	55, 65, 611
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	553
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	1 cut(s)	14
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	7 cut(s)	21, 26, 92, 158, 266, 548, 589
HpyCH4III	ACNGT	2 cut(s)	490, 633
HpyCH4V	TGCA	4 cut(s)	95, 417, 473, 548
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	8 cut(s)	128, 336, 417, 445, 583, 592, 640, 654
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	203, 376
LmnI	GCTCC	1 cut(s)	585
LweI	GCATC	2 cut(s)	535, 557
MabI	ACCWGGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	2 cut(s)	205, 378
MboI	GATC	2 cut(s)	203, 376
MboII	GAAGA	7 cut(s)	113, 198, 203, 208, 281, 520, 632
MflI	RGATCY	1 cut(s)	203
MluCI	AATT	4 cut(s)	101, 236, 478, 538
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	482
MnlI	CCTC	7 cut(s)	39, 127, 188, 195, 330, 478, 667
Mph1103I	ATGCAT	1 cut(s)	550
MslI	CAYNNNNRTG	1 cut(s)	641
MspR9I	CCNGG	3 cut(s)	7, 77, 399
MvaI	CCWGG	3 cut(s)	7, 77, 399
NdeII	GATC	2 cut(s)	203, 376
NlaIII	CATG	8 cut(s)	128, 336, 417, 445, 583, 592, 640, 654
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	437, 445
PflFI	GACNNNGTC	1 cut(s)	490
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	3 cut(s)	5, 75, 397
PspEI	GGTNACC	1 cut(s)	71
PspGI	CCWGG	3 cut(s)	5, 75, 397
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	3 cut(s)	79, 317, 353
PspPPI	RGGWCCY	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	475
PstNI	CAGNNNCTG	2 cut(s)	92, 520
PsuI	RGATCY	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	490
RsaI	GTAC	3 cut(s)	90, 263, 348
RsaNI	GTAC	3 cut(s)	89, 262, 347
RseI	CAYNNNNRTG	1 cut(s)	641
Sau3AI	GATC	2 cut(s)	203, 376
Sau96I	GGNCC	3 cut(s)	79, 317, 353
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	3 cut(s)	7, 77, 399
SexAI	ACCWGGT	1 cut(s)	75
SfaNI	GCATC	2 cut(s)	535, 557
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	3 cut(s)	79, 317, 353
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	4 cut(s)	101, 236, 478, 538
StyD4I	CCNGG	3 cut(s)	5, 75, 397
TaaI	ACNGT	2 cut(s)	490, 633
TaqI	TCGA	3 cut(s)	141, 159, 219
TaqII	GACCGA	1 cut(s)	649
TasI	AATT	4 cut(s)	101, 236, 478, 538
TatI	WGTACW	2 cut(s)	261, 346
TfiI	GAWTC	2 cut(s)	437, 445
TscAI	CASTG	2 cut(s)	480, 525
TseFI	GTSAC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	3 cut(s)	113, 458, 625
TspRI	CASTG	2 cut(s)	480, 525
Tth111I	GACNNNGTC	1 cut(s)	490
VpaK11BI	GGWCC	3 cut(s)	79, 317, 353
ZrmI	AGTACT	1 cut(s)	348
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.