Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Forward (+)

22761192 .. 22779217

Gene Structure 18026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG234300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCAAAGAATCTGTGGTTCTAACAAAGACAAGCGTTACAAGAACCGGGAGTTACAGATTATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTATAGACAAAGAAGAGGTTTACTTGAATCTCGTACTTGAATTTGTTCCTGAAACTGTTTACCGTATCCCAAGGAACTATAGCAGGATCAACCAGCGGATGCCTTTAATATATGTTAAACTTTATACCTACCAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCGTGACATCAAGCCTCAAAATTTACTTGTAATTGGTCTTCCAAAAAAAACACAAAAAACAATCAAAAAGGACATGGAAAGGTCCCTGTTTGTTCAAGACATCAAAACTCTGACACTAACAAAACAAGAAATGATATCCATTCCTTCTGTTGCATTCTTTCTAGACTATAATGACACAACTTTTTATCCAACAAAGGGAGTTTTACTTCCAGCTGATGGTGTTGCTAGAAATATGTCTGGTGATAGAACTGAAGCTGTTACGGGTACTGTTTCTTCTGATGAGTGTTTAAAGAATGGTGCGAAGAAGTCAAGTGAGTCTGCCATAAATAAGAAGAAGGGTGGAAGACTAGTGTCTCCAAATTCACAGACATACATTGGATCTGGCAAGGTTGTAGAAATCAAGAGTGCAATTTATGCATTGGGTGTTGAGACCGTGATATTTGATGATGAGCTCTCAGCAGGGCAATTACGCAATTTGGAAAAGGCTTGTGGTGGGGATGTTAGAGTCTGTGACCGCCCTGCTCTCATTCTTGGTATTTTTAACCAGAGGACGGCAACACATGAAGCAGCTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

290

Amino Acids

32.66

Weight (kDa)

9.25

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 109	4.1e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	12 - 110	8.7e-07	Protein tyrosine and serine/threonine kinase
GTP-bdg_N	PF13167	214 - 279	1.8e-18	GTP-binding GTPase N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	512
AciI	CCGC	2 cut(s)	211, 811
AclWI	GGATC	3 cut(s)	81, 209, 682
AcsI	RAATTY	3 cut(s)	155, 316, 655
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	2 cut(s)	150, 562
AfiI	CCNNNNNNNGG	3 cut(s)	491, 512, 847
AgsI	TTSAA	4 cut(s)	114, 142, 155, 392
AhlI	ACTAGT	1 cut(s)	643
AluBI	AGCT	4 cut(s)	509, 551, 748, 866
AluI	AGCT	4 cut(s)	509, 551, 748, 866
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	2 cut(s)	654, 719
AlwI	GGATC	3 cut(s)	81, 209, 682
ApeKI	GCWGC	1 cut(s)	863
ApoI	RAATTY	3 cut(s)	155, 316, 655
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	287, 548
AvaII	GGWCC	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	750
BarI	GAAGNNNNNNTAC	4 cut(s)	318, 350, 553, 585
BbsI	GAAGAC	2 cut(s)	326, 646
Bbv12I	GWGCWC	1 cut(s)	750
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	864
BciVI	GTATCC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	654, 719
BcuI	ACTAGT	1 cut(s)	643
BfaI	CTAG	3 cut(s)	458, 522, 644
BfmI	CTRYAG	3 cut(s)	117, 193, 869
BfuI	GTATCC	1 cut(s)	191
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	1 cut(s)	864
BlsI	GCNGC	1 cut(s)	865
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	204, 297
BoxI	GACNNNNGTC	1 cut(s)	646
BpiI	GAAGAC	2 cut(s)	326, 646
BpuMI	CCSGG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	719
BsaJI	CCNNGG	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	3 cut(s)	491, 512, 847
Bse3DI	GCAATG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	2 cut(s)	219, 799
BseLI	CCNNNNNNNGG	3 cut(s)	491, 512, 847
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	765
BseSI	GKGCMC	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	750
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	3 cut(s)	491, 512, 847
BsmAI	GTCTC	2 cut(s)	654, 719
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	449
Bso31I	GGTCTC	1 cut(s)	719
Bsp1286I	GDGCHC	2 cut(s)	262, 750
Bsp143I	GATC	4 cut(s)	73, 201, 249, 674
BspACI	CCGC	2 cut(s)	211, 811
BspCNI	CTCAG	1 cut(s)	764
BspLI	GGNNCC	1 cut(s)	380
BspPI	GGATC	3 cut(s)	81, 209, 682
BspTNI	GGTCTC	1 cut(s)	719
BsrDI	GCAATG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	4 cut(s)	73, 201, 249, 674
BssT1I	CCWWGG	1 cut(s)	185
Bst4CI	ACNGT	5 cut(s)	172, 179, 299, 565, 730
Bst6I	CTCTTC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstDEI	CTNAG	1 cut(s)	751
BstF5I	GGATG	2 cut(s)	219, 799
BstKTI	GATC	4 cut(s)	76, 204, 252, 677
BstMAI	GTCTC	2 cut(s)	654, 719
BstMBI	GATC	4 cut(s)	73, 201, 249, 674
BstMWI	GCNNNNNNNGC	1 cut(s)	710
BstPAI	GACNNNNGTC	1 cut(s)	646
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	3 cut(s)	117, 193, 869
BstSLI	GKGCMC	1 cut(s)	262
BstV2I	GAAGAC	2 cut(s)	326, 646
BstX2I	RGATCY	2 cut(s)	249, 674
BstYI	RGATCY	2 cut(s)	249, 674
BsuI	GTATCC	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	219, 799
Cfr13I	GGNCC	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	149, 561
CviAII	CATG	2 cut(s)	370, 857
CviJI	RGCY	6 cut(s)	310, 509, 551, 748, 782, 866
CviKI_1	RGCY	6 cut(s)	310, 509, 551, 748, 782, 866
CviQI	GTAC	2 cut(s)	149, 561
DdeI	CTNAG	1 cut(s)	751
DpnI	GATC	4 cut(s)	75, 203, 251, 676
DpnII	GATC	4 cut(s)	73, 201, 249, 674
DraI	TTTAAA	1 cut(s)	585
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	750
Eco31I	GGTCTC	1 cut(s)	719
Eco32I	GATATC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	748
Eco57I	CTGAAG	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	748
EcoO109I	RGGNCCY	1 cut(s)	378
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	373, 860
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	2 cut(s)	369, 856
Fnu4HI	GCNGC	1 cut(s)	864
FokI	GGATG	2 cut(s)	226, 806
FriOI	GRGCYC	1 cut(s)	750
Fsp4HI	GCNGC	1 cut(s)	864
FspBI	CTAG	3 cut(s)	458, 522, 644
GluI	GCNGC	1 cut(s)	864
HapII	CCGG	1 cut(s)	46
Hin1II	CATG	2 cut(s)	373, 860
HinfI	GANTC	4 cut(s)	9, 142, 611, 801
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	2 cut(s)	287, 548
Hpy166II	GTNNAC	2 cut(s)	136, 175
Hpy188I	TCNGA	2 cut(s)	408, 574
Hpy188III	TCNNGA	4 cut(s)	164, 392, 458, 697
Hpy8I	GTNNAC	2 cut(s)	136, 175
HpyAV	CCTTC	2 cut(s)	450, 625
HpyCH4III	ACNGT	5 cut(s)	172, 179, 299, 565, 730
HpyCH4V	TGCA	5 cut(s)	4, 64, 449, 704, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	710
HpyF3I	CTNAG	1 cut(s)	751
Hsp92II	CATG	2 cut(s)	373, 860
Kzo9I	GATC	4 cut(s)	73, 201, 249, 674
LweI	GCATC	2 cut(s)	204, 297
MaeI	CTAG	3 cut(s)	458, 522, 644
MaeIII	GTNAC	6 cut(s)	35, 51, 293, 299, 553, 806
MalI	GATC	4 cut(s)	75, 203, 251, 676
MboI	GATC	4 cut(s)	73, 201, 249, 674
MboII	GAAGA	6 cut(s)	140, 326, 561, 610, 640, 651
MflI	RGATCY	2 cut(s)	249, 674
MhlI	GDGCHC	2 cut(s)	262, 750
MluCI	AATT	7 cut(s)	155, 316, 327, 655, 705, 761, 769
MlyI	GAGTC	2 cut(s)	620, 810
MmeI	TCCRAC	2 cut(s)	51, 509
MnlI	CCTC	3 cut(s)	124, 321, 837
Mph1103I	ATGCAT	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	4 cut(s)	221, 231, 584, 837
MspA1I	CMGCKG	2 cut(s)	211, 509
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	710
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	4 cut(s)	73, 201, 249, 674
NlaIII	CATG	2 cut(s)	373, 860
NlaIV	GGNNCC	1 cut(s)	380
NmuCI	GTSAC	3 cut(s)	293, 299, 806
NsiI	ATGCAT	1 cut(s)	715
PctI	GAATGC	1 cut(s)	449
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	9, 142
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	1 cut(s)	865
PleI	GAGTC	2 cut(s)	619, 809
PpsI	GAGTC	2 cut(s)	619, 809
PpuMI	RGGWCCY	1 cut(s)	378
PshAI	GACNNNNGTC	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	380
PspPI	GGNCC	1 cut(s)	378
PspPPI	RGGWCCY	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	249, 674
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	2 cut(s)	150, 562
RsaNI	GTAC	2 cut(s)	149, 561
SacI	GAGCTC	1 cut(s)	750
SaqAI	TTAA	4 cut(s)	221, 231, 584, 837
SatI	GCNGC	1 cut(s)	864
Sau3AI	GATC	4 cut(s)	73, 201, 249, 674
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	2 cut(s)	620, 810
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	262, 750
SetI	ASST	8 cut(s)	135, 245, 380, 511, 553, 687, 750, 868
SfaNI	GCATC	2 cut(s)	204, 297
SfcI	CTRYAG	3 cut(s)	117, 193, 869
SinI	GGWCC	1 cut(s)	378
SpeI	ACTAGT	1 cut(s)	643
Sse9I	AATT	7 cut(s)	155, 316, 327, 655, 705, 761, 769
SsiI	CCGC	2 cut(s)	211, 811
SspMI	CTAG	3 cut(s)	458, 522, 644
SstI	GAGCTC	1 cut(s)	750
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	5 cut(s)	172, 179, 299, 565, 730
TasI	AATT	7 cut(s)	155, 316, 327, 655, 705, 761, 769
TfiI	GAWTC	2 cut(s)	9, 142
Tru1I	TTAA	4 cut(s)	221, 231, 584, 837
Tru9I	TTAA	4 cut(s)	221, 231, 584, 837
TseFI	GTSAC	3 cut(s)	293, 299, 806
TseI	GCWGC	1 cut(s)	863
Tsp45I	GTSAC	3 cut(s)	293, 299, 806
TspDTI	ATGAA	1 cut(s)	873
Van91I	CCANNNNNTGG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	3 cut(s)	155, 316, 655
XbaI	TCTAGA	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	3 cut(s)	458, 522, 644
Zsp2I	ATGCAT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.