Rh6CG409900
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
59581837 .. 59591614
9778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG409900.1

Sequence Viewer

Length: 492 bp
ATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTACAGACAAAGAAGAGGTTTACTTGAATCTCGTACTTGAATTTGTTCCTGAAACTGTTTACCGTATCCCAAGGAACTATAGCAGGATCAACCAGCGGATGCCTTTAATATATGTTAAACTTTATACCTACCAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCGTGACATCAAGCCTCAAAATTTACTTGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGTACAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCACCCTGGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGGTATCATGTTCCTCGGTATTGGCTCAAGCCATCCCAAAATCTGTTGGTGGTATTTGAGGAGCTTGCTGGCGATGTTACAAAGATTGATCTTCTGA

Protein Analysis

163

Amino Acids

19.01

Weight (kDa)

8.82

Isoelectric Point (pI)

24.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 110 7e-21 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 108 3e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 151
AclWI GGATC 2 cut(s) 21, 149
AcsI RAATTY 2 cut(s) 95, 256
AfaI GTAC 2 cut(s) 90, 310
AgsI TTSAA 4 cut(s) 54, 82, 95, 395
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 3 cut(s) 286, 349, 459
AluI AGCT 3 cut(s) 286, 349, 459
AlwI GGATC 2 cut(s) 21, 149
ApoI RAATTY 2 cut(s) 95, 256
Asp700I GAANNNNTTC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 202
BccI CCATC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 360
BciVI GTATCC 1 cut(s) 131
BfmI CTRYAG 2 cut(s) 57, 133
BfuI GTATCC 1 cut(s) 131
BglII AGATCT 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 144, 237
BpuEI CTTGAG 2 cut(s) 340, 406
BsaJI CCNNGG 4 cut(s) 125, 358, 359, 409
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 4 cut(s) 125, 358, 359, 409
BseGI GGATG 2 cut(s) 159, 427
BseMI GCAATG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 469
BseSI GKGCMC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 4 cut(s) 13, 141, 189, 483
BspACI CCGC 1 cut(s) 151
BspPI GGATC 2 cut(s) 21, 149
BsrDI GCAATG 1 cut(s) 40
BssECI CCNNGG 4 cut(s) 125, 358, 359, 409
BssMI GATC 4 cut(s) 13, 141, 189, 483
BssT1I CCWWGG 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 3 cut(s) 112, 119, 239
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 461, 465
BstF5I GGATG 2 cut(s) 159, 427
BstKTI GATC 4 cut(s) 16, 144, 192, 486
BstMBI GATC 4 cut(s) 13, 141, 189, 483
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 2 cut(s) 57, 133
BstSLI GKGCMC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuI GTATCC 1 cut(s) 131
BtgZI GCGATG 1 cut(s) 482
BtsCI GGATG 2 cut(s) 159, 427
Cac8I GCNNGC 2 cut(s) 461, 465
Csp6I GTAC 2 cut(s) 89, 309
CviAII CATG 1 cut(s) 403
CviJI RGCY 7 cut(s) 250, 286, 328, 349, 420, 426, 459
CviKI_1 RGCY 7 cut(s) 250, 286, 328, 349, 420, 426, 459
CviQI GTAC 2 cut(s) 89, 309
DpnI GATC 4 cut(s) 15, 143, 191, 485
DpnII GATC 4 cut(s) 13, 141, 189, 483
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 125
Eco32I GATATC 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 358
EcoRV GATATC 1 cut(s) 368
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 1 cut(s) 406
FaiI YATR 8 cut(s) 135, 166, 168, 180, 210, 212, 216, 404
FatI CATG 1 cut(s) 402
FokI GGATG 2 cut(s) 166, 414
Hin1II CATG 1 cut(s) 406
HinfI GANTC 1 cut(s) 82
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 76, 115
Hpy188I TCNGA 1 cut(s) 491
Hpy188III TCNNGA 3 cut(s) 104, 319, 392
Hpy8I GTNNAC 2 cut(s) 76, 115
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 3 cut(s) 112, 119, 239
HpyCH4V TGCA 2 cut(s) 4, 355
Hsp92II CATG 1 cut(s) 406
Kzo9I GATC 4 cut(s) 13, 141, 189, 483
LmnI GCTCC 2 cut(s) 346, 456
LpnPI CCDG 8 cut(s) 117, 124, 161, 200, 342, 345, 372, 449
LweI GCATC 2 cut(s) 144, 237
MaeIII GTNAC 3 cut(s) 233, 239, 471
MalI GATC 4 cut(s) 15, 143, 191, 485
MboI GATC 4 cut(s) 13, 141, 189, 483
MboII GAAGA 2 cut(s) 80, 478
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 4 cut(s) 95, 256, 336, 374
MnlI CCTC 4 cut(s) 64, 261, 419, 447
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 2 cut(s) 161, 171
MspA1I CMGCKG 2 cut(s) 151, 286
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
NdeII GATC 4 cut(s) 13, 141, 189, 483
NlaIII CATG 1 cut(s) 406
NmuCI GTSAC 2 cut(s) 233, 239
PasI CCCWGGG 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 2 cut(s) 90, 310
RsaNI GTAC 2 cut(s) 89, 309
SaqAI TTAA 2 cut(s) 161, 171
Sau3AI GATC 4 cut(s) 13, 141, 189, 483
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 202
SetI ASST 6 cut(s) 75, 185, 288, 351, 400, 461
SfaNI GCATC 2 cut(s) 144, 237
SfcI CTRYAG 2 cut(s) 57, 133
SmlI CTYRAG 2 cut(s) 319, 421
SmoI CTYRAG 2 cut(s) 319, 421
Sse9I AATT 4 cut(s) 95, 256, 336, 374
SsiI CCGC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 3 cut(s) 112, 119, 239
TasI AATT 4 cut(s) 95, 256, 336, 374
TatI WGTACW 1 cut(s) 308
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 2 cut(s) 161, 171
Tru9I TTAA 2 cut(s) 161, 171
TseFI GTSAC 2 cut(s) 233, 239
Tsp45I GTSAC 2 cut(s) 233, 239
XapI RAATTY 2 cut(s) 95, 256
XmnI GAANNNNTTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.