Rmu_sc0008528.1_g000002

Galactose binding lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008528.1
OG0001191
Physical Location & Seq
Forward (+)
14390 .. 14750
361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008528.1_g000002.1.cds

Sequence Viewer

Length: 276 bp
atggtaactggattgttcattggaagatactggactattcatgctaatggtaactgcagcgcgtgcagttattttggtatattcaggattaacaagtgccaatttggttgtctccaaccgactcaacaatggtatcatgttcctcggtcttggctcaagccatcccaaaatctgttggtggtatttgaggagcttgctggcgatgttacaaagattgatcttctgaaagtcacccacgtgttgagaaatggcaaactaagaaccgaggcaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

91

Amino Acids

10.44

Weight (kDa)

9.3

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 62
AcvI CACGTG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 237
AleI CACNNNNGTG 1 cut(s) 236
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 57
AspLEI GCGC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 223
BaeI ACNNNNGTAYC 2 cut(s) 116, 149
BbrPI CACGTG 1 cut(s) 238
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 55
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 143, 264
Bse1I ACTGG 2 cut(s) 13, 35
BseDI CCNNGG 2 cut(s) 143, 264
BseGI GGATG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 13, 35
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 69
BsgI GTGCAG 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 217
BspFNI CGCG 1 cut(s) 62
BspMAI CTGCAG 1 cut(s) 59
BsrI ACTGG 2 cut(s) 13, 35
BssECI CCNNGG 2 cut(s) 143, 264
BssMI GATC 1 cut(s) 217
BstAPI GCANNNNNTGC 1 cut(s) 63
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 3 cut(s) 64, 195, 199
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 3 cut(s) 64, 195, 199
CfoI GCGC 1 cut(s) 62
CviAII CATG 2 cut(s) 41, 137
CviJI RGCY 3 cut(s) 154, 160, 193
CviKI_1 RGCY 3 cut(s) 154, 160, 193
DdeI CTNAG 1 cut(s) 257
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eco72I CACGTG 1 cut(s) 238
FaeI CATG 2 cut(s) 44, 140
FaiI YATR 3 cut(s) 42, 80, 138
FatI CATG 2 cut(s) 40, 136
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 58
GlaI GCGC 1 cut(s) 61
GluI GCNGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 62
Hin1II CATG 2 cut(s) 44, 140
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 1 cut(s) 121
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 57, 66
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 257
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 44, 140
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 3 cut(s) 16, 70, 183
Lsp1109I GCAGC 1 cut(s) 69
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 4 cut(s) 4, 50, 205, 229
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 36, 212
MluCI AATT 1 cut(s) 101
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 3 cut(s) 153, 181, 259
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 2 cut(s) 45, 236
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 1 cut(s) 217
NlaIII CATG 2 cut(s) 44, 140
NmuCI GTSAC 1 cut(s) 229
OliI CACNNNNGTG 1 cut(s) 236
PkrI GCNGC 1 cut(s) 59
PleI GAGTC 1 cut(s) 115
PmaCI CACGTG 1 cut(s) 238
PmlI CACGTG 1 cut(s) 238
PpsI GAGTC 1 cut(s) 115
Ppu21I YACGTR 1 cut(s) 238
PspCI CACGTG 1 cut(s) 238
PstI CTGCAG 1 cut(s) 59
RseI CAYNNNNRTG 2 cut(s) 45, 236
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 217
SchI GAGTC 1 cut(s) 115
SetI ASST 2 cut(s) 195, 240
SfcI CTRYAG 1 cut(s) 55
SmiMI CAYNNNNRTG 2 cut(s) 45, 236
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 101
TaiI ACGT 1 cut(s) 240
TaqII GACCGA 1 cut(s) 135
TasI AATT 1 cut(s) 101
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 7, 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.