Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Forward (+)

35155895 .. 35172328

Gene Structure 16434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG230300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGATACATTTGTTTTCACAAATACACCTGGCCATCCTGTTATATATCGCCCTACAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCGTGACATCAAGCCTCAAAATTTACTTGCTCAAAAGTTTTTATTTTCAAATTGGGCCTATGGAGAAGGCTTGGAACAGCCCAATCCACTTTGGGGTCAAAAATGTGGTAATAGAGTCAACTTGAGGGCAAGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

80

Amino Acids

9.2

Weight (kDa)

9.57

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 46	1.1e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	27
AoxI	GGCC	2 cut(s)	30, 159
ApoI	RAATTY	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	70
BaeI	ACNNNNGTAYC	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	32
BccI	CCATC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	53
BglII	AGATCT	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	70
BshFI	GGCC	2 cut(s)	32, 161
BslI	CCNNNNNNNGG	1 cut(s)	197
BsnI	GGCC	2 cut(s)	32, 161
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	32, 161
BssMI	GATC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	53
BstSLI	GKGCMC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	32, 161
BtsCI	GGATG	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	159
CviJI	RGCY	5 cut(s)	32, 118, 161, 174, 184
CviKI_1	RGCY	5 cut(s)	32, 118, 161, 174, 184
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	27
FaiI	YATR	7 cut(s)	43, 45, 78, 80, 84, 165, 241
FokI	GGATG	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	32, 161
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	219
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	57
LpnPI	CCDG	3 cut(s)	14, 41, 50
LweI	GCATC	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	101, 107
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	2 cut(s)	124, 154
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	129, 222
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
Msp20I	TGGCCA	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
NdeII	GATC	1 cut(s)	57
NmuCI	GTSAC	2 cut(s)	101, 107
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	2 cut(s)	124, 154
StyD4I	CCNGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	107
TasI	AATT	2 cut(s)	124, 154
TseFI	GTSAC	2 cut(s)	101, 107
Tsp45I	GTSAC	2 cut(s)	101, 107
XapI	RAATTY	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.