RchiOBHm_Chr2g0113301

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001191
Physical Location & Seq
Reverse (-)
25479321 .. 25479896
576 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48665

Sequence Viewer

Length: 321 bp
ATGAATTGGAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCCTGGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGGCATCTGCTCATATGGACCAGTTTCTCTTCTCTCTGGTCTTAACCCTCGTCCATTACACTTGTTTCTCCATTTCTTTGCAGCTGCCATCTATGGTGTTGGCCGCATAATGCTTCCGTTCCCTTCACCTAAACGCATGTGGCTTGGGTTTCTATTGATCTTGGTATGTCAAAGAAATTATTTACACTTCTGTCTTGTGTTCACGTTTGTCAGTTATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

106

Amino Acids

11.97

Weight (kDa)

8.93

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SE PF08491 31 - 80 2.4e-11 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 202
AcoI YGGCCR 1 cut(s) 199
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 2 cut(s) 52, 182
AluI AGCT 2 cut(s) 52, 182
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 3 cut(s) 58, 179, 182
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 216
AvaII GGWCC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 70, 169, 191
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 63
BisI GCNGC 4 cut(s) 59, 180, 183, 202
BlsI GCNGC 4 cut(s) 60, 181, 184, 203
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 3 cut(s) 70, 169, 191
BshFI GGCC 1 cut(s) 201
BsnI GGCC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 255
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 132
BstKTI GATC 1 cut(s) 258
BstMBI GATC 1 cut(s) 255
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 70, 169, 191
BsuRI GGCC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 1 cut(s) 235
CviJI RGCY 6 cut(s) 31, 52, 61, 182, 201, 241
CviKI_1 RGCY 6 cut(s) 31, 52, 61, 182, 201, 241
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 61
EcoRV GATATC 1 cut(s) 71
FaeI CATG 1 cut(s) 238
FaiI YATR 8 cut(s) 112, 114, 192, 206, 236, 265, 315, 319
FatI CATG 1 cut(s) 234
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 4 cut(s) 59, 180, 183, 202
Fsp4HI GCNGC 4 cut(s) 59, 180, 183, 202
GluI GCNGC 4 cut(s) 59, 180, 183, 202
HaeIII GGCC 1 cut(s) 201
Hin1II CATG 1 cut(s) 238
HphI GGTGA 1 cut(s) 216
Hpy166II GTNNAC 1 cut(s) 300
Hpy188III TCNNGA 2 cut(s) 22, 95
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 2 cut(s) 92, 231
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 3 cut(s) 14, 58, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 5 cut(s) 45, 48, 75, 120, 132
Lsp1109I GCAGC 3 cut(s) 70, 169, 191
LweI GCATC 1 cut(s) 111
MaeII ACGT 1 cut(s) 302
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MboII GAAGA 1 cut(s) 119
MluCI AATT 4 cut(s) 4, 39, 77, 274
MnlI CCTC 1 cut(s) 156
MseI TTAA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeI CATATG 1 cut(s) 112
NdeII GATC 1 cut(s) 255
NlaIII CATG 1 cut(s) 238
NspI RCATGY 1 cut(s) 238
PkrI GCNGC 4 cut(s) 60, 181, 184, 203
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspPI GGNCC 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 4 cut(s) 59, 180, 183, 202
Sau3AI GATC 1 cut(s) 255
Sau96I GGNCC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 63
SetI ASST 4 cut(s) 54, 184, 229, 305
SfaNI GCATC 1 cut(s) 111
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 4 cut(s) 4, 39, 77, 274
SsiI CCGC 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 61
TaiI ACGT 1 cut(s) 305
TasI AATT 4 cut(s) 4, 39, 77, 274
TauI GCSGC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 3 cut(s) 58, 179, 182
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 116
XceI RCATGY 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.