Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

73429026 .. 73431639

Gene Structure 2614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAACTCCATAAAGCTATTAAGTTATGTGAGCAAGCTCTGTTGAATACTGATCTAACTGTTACATCCTTAGGGAGATATCAACAGGCACATGTATTCTCTTCAAAACCAGGAGGTTGTGCAGTGTTTCTCTCAAATTGTAATGCAATCTCAGCTGCAATGGTGAGTTTCAATGACCGAAACTGTGAGATCCCTGCTTGTTCCATCAGCATCCTTTCAGACTGCGAAAATGTTGTATTCAACACTGCCAAAGTAAATGAAATAAACAATGGTGATACAACTCTCACAGTCATTGGTTTCTTAGATAAGTTGAACATCACTAGAGACTCTAATGATTATCTATGGCACACCACCAGTCCATCTGAATCATTTATGCGTGGTGGTAAGCATCCAATTCTCACTATGTTGTCAGCTGGAAACGCTATGCATGTCTTTGTCAATGACCAGCTCTCAGGATCAACTTATGGGACTTTGCAAGACCAGAGATTCACTTTTACAGGAGATGTAAACATGCATGCTAGGGTGAATAAAATTTTTCTTCTAAGTGTAGCTGTTGGATTACCGGGACCAGTTGTTCAACAAGGATTAGATCAAGGAAGTAGAGATTTATCAGGGCAGATATGGTCATACAAGGTTGGGCTAAACGGAGAATCCATGAATCTCGGTTCTCCAACTTCCACCTCTGCAGTGAATTGGACGAGGGTGTCTAAGGACACAGAAACAACAGCCAATGACTTGTCCAATTTTGATGCACCTGAAGGGGACGAGCCTTTGGCTTTGGACATGGGGAGCATGGGGAAGGGTGAAGTACGGATAAATGCGGGGAGCATTGGAAGATACTGGACTGTTCATGCTAATGGTTACTGCAGTGCGTGCAGTTATTTTGGTACATTCAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCGATTCAACAATGGTATGTATCATGTTCCTCGGTCTTGGCTCAAGCCATCCTAAAATCTGTTGGTGGTTTTGAGGAGCTTGCTGGCGATGTTACAAAGATTGATCTTCTGAAAGTCACCCACGTGTGGAGAAATGGTAGACCAAGAACTAAGGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

363

Amino Acids

39.33

Weight (kDa)

6.24

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHD	PF17834	29 - 85	4.2e-17	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	248 - 322	1e-10	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	703
AccI	GTMKAC	1 cut(s)	1066
AciI	CCGC	1 cut(s)	821
AclWI	GGATC	2 cut(s)	184, 463
AcsI	RAATTY	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	777
AcvI	CACGTG	1 cut(s)	1051
AfaI	GTAC	2 cut(s)	810, 889
AfiI	CCNNNNNNNGG	1 cut(s)	1053
AflIII	ACRYGT	2 cut(s)	91, 1050
AgsI	TTSAA	7 cut(s)	46, 105, 172, 241, 313, 578, 935
AjnI	CCWGG	1 cut(s)	109
AleI	CACNNNNGTG	1 cut(s)	1049
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	7 cut(s)	17, 38, 155, 413, 448, 551, 1006
AluI	AGCT	7 cut(s)	17, 38, 155, 413, 448, 551, 1006
Alw26I	GTCTC	2 cut(s)	318, 926
AlwI	GGATC	2 cut(s)	184, 463
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	5 cut(s)	175, 284, 535, 815, 1036
AvaII	GGWCC	1 cut(s)	566
AxyI	CCTNAGG	1 cut(s)	70
BbrPI	CACGTG	1 cut(s)	1051
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	3 cut(s)	212, 367, 983
BciT130I	CCWGG	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	318, 926
BfaI	CTAG	2 cut(s)	321, 519
BfmI	CTRYAG	2 cut(s)	684, 865
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	2 cut(s)	111, 564
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	2 cut(s)	111, 564
BmsI	GCATC	3 cut(s)	219, 397, 739
BpuEI	CTTGAG	1 cut(s)	954
BpuMI	CCSGG	1 cut(s)	564
BsaAI	YACGTR	1 cut(s)	1051
BsaJI	CCNNGG	1 cut(s)	957
BsaXI	ACNNNNNCTCC	2 cut(s)	1048, 1078
Bsc4I	CCNNNNNNNGG	1 cut(s)	1053
Bse1I	ACTGG	3 cut(s)	354, 569, 845
Bse21I	CCTNAGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	957
BseGI	GGATG	4 cut(s)	65, 210, 388, 975
BseLI	CCNNNNNNNGG	1 cut(s)	1053
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	165, 465
BseNI	ACTGG	3 cut(s)	354, 569, 845
BseRI	GAGGAG	1 cut(s)	1016
BseXI	GCAGC	1 cut(s)	142
BsgI	GTGCAG	2 cut(s)	141, 895
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	3 cut(s)	481, 579, 776
BslI	CCNNNNNNNGG	1 cut(s)	1053
BsmAI	GTCTC	2 cut(s)	318, 926
BsmFI	GGGAC	3 cut(s)	481, 579, 776
Bsp143I	GATC	5 cut(s)	52, 189, 455, 589, 1030
BspACI	CCGC	1 cut(s)	821
BspCNI	CTCAG	2 cut(s)	164, 464
BspLI	GGNNCC	1 cut(s)	567
BspMAI	CTGCAG	2 cut(s)	688, 869
BspPI	GGATC	2 cut(s)	184, 463
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	3 cut(s)	354, 569, 845
BssECI	CCNNGG	1 cut(s)	957
BssMI	GATC	5 cut(s)	52, 189, 455, 589, 1030
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	4 cut(s)	61, 185, 289, 847
Bst6I	CTCTTC	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	873
BstBAI	YACGTR	1 cut(s)	1051
BstC8I	GCNNGC	5 cut(s)	36, 516, 874, 1008, 1012
BstDEI	CTNAG	7 cut(s)	70, 151, 301, 451, 542, 708, 1077
BstF5I	GGATG	4 cut(s)	65, 210, 388, 975
BstKTI	GATC	5 cut(s)	55, 192, 458, 592, 1033
BstMAI	GTCTC	2 cut(s)	318, 926
BstMBI	GATC	5 cut(s)	52, 189, 455, 589, 1030
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 419, 873
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	4 cut(s)	95, 431, 514, 518
BstSCI	CCNGG	2 cut(s)	109, 562
BstSFI	CTRYAG	2 cut(s)	684, 865
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	1029
BtsCI	GGATG	4 cut(s)	65, 210, 388, 975
BtsI	GCAGTG	4 cut(s)	129, 243, 693, 874
BtsIMutI	CAGTG	4 cut(s)	129, 243, 693, 874
Cac8I	GCNNGC	5 cut(s)	36, 516, 874, 1008, 1012
Cfr13I	GGNCC	1 cut(s)	566
Csp6I	GTAC	2 cut(s)	809, 888
CviAII	CATG	9 cut(s)	92, 428, 511, 515, 655, 784, 793, 851, 951
CviQI	GTAC	2 cut(s)	809, 888
DdeI	CTNAG	7 cut(s)	70, 151, 301, 451, 542, 708, 1077
DpnI	GATC	5 cut(s)	54, 191, 457, 591, 1032
DpnII	GATC	5 cut(s)	52, 189, 455, 589, 1030
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco32I	GATATC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	777
Eco72I	CACGTG	1 cut(s)	1051
Eco81I	CCTNAGG	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	80
EcoT22I	ATGCAT	2 cut(s)	429, 516
FaeI	CATG	9 cut(s)	95, 431, 514, 518, 658, 787, 796, 854, 954
FaqI	GGGAC	3 cut(s)	481, 579, 776
FatI	CATG	9 cut(s)	91, 427, 510, 514, 654, 783, 792, 850, 950
FauI	CCCGC	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	1066
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	4 cut(s)	52, 197, 375, 962
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	2 cut(s)	321, 519
GluI	GCNGC	1 cut(s)	156
HapII	CCGG	1 cut(s)	563
Hin1II	CATG	9 cut(s)	95, 431, 514, 518, 658, 787, 796, 854, 954
HinfI	GANTC	6 cut(s)	326, 365, 486, 650, 658, 931
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	5 cut(s)	175, 284, 535, 815, 1036
Hpy166II	GTNNAC	2 cut(s)	508, 1067
Hpy188I	TCNGA	3 cut(s)	220, 364, 1038
Hpy188III	TCNNGA	2 cut(s)	453, 895
Hpy8I	GTNNAC	2 cut(s)	508, 1067
HpyAV	CCTTC	2 cut(s)	752, 793
HpyCH4III	ACNGT	4 cut(s)	61, 185, 289, 847
HpyCH4IV	ACGT	1 cut(s)	1050
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 419, 873
HpyF3I	CTNAG	7 cut(s)	70, 151, 301, 451, 542, 708, 1077
HpySE526I	ACGT	1 cut(s)	1050
Hsp92II	CATG	9 cut(s)	95, 431, 514, 518, 658, 787, 796, 854, 954
Kzo9I	GATC	5 cut(s)	52, 189, 455, 589, 1030
LmnI	GCTCC	3 cut(s)	789, 825, 1003
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	3 cut(s)	219, 397, 739
MaeI	CTAG	2 cut(s)	321, 519
MaeII	ACGT	1 cut(s)	1050
MaeIII	GTNAC	4 cut(s)	61, 860, 1018, 1042
MalI	GATC	5 cut(s)	54, 191, 457, 591, 1032
MboI	GATC	5 cut(s)	52, 189, 455, 589, 1030
MboII	GAAGA	4 cut(s)	93, 530, 846, 1025
MflI	RGATCY	1 cut(s)	189
MluCI	AATT	6 cut(s)	136, 393, 531, 691, 742, 911
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	3 cut(s)	535, 695, 949
MnlI	CCTC	5 cut(s)	107, 691, 693, 967, 994
Mph1103I	ATGCAT	2 cut(s)	429, 516
MseI	TTAA	2 cut(s)	21, 900
MslI	CAYNNNNRTG	2 cut(s)	855, 1049
MspA1I	CMGCKG	2 cut(s)	155, 413
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	2 cut(s)	111, 564
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	152, 419, 873
NciI	CCSGG	1 cut(s)	564
NdeII	GATC	5 cut(s)	52, 189, 455, 589, 1030
NlaIII	CATG	9 cut(s)	95, 431, 514, 518, 658, 787, 796, 854, 954
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	1 cut(s)	1042
NsiI	ATGCAT	2 cut(s)	429, 516
NspI	RCATGY	4 cut(s)	95, 431, 514, 518
OliI	CACNNNNGTG	1 cut(s)	1049
PaeI	GCATGC	1 cut(s)	518
PciI	ACATGT	1 cut(s)	91
PfeI	GAWTC	5 cut(s)	365, 486, 650, 658, 931
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	320
PmaCI	CACGTG	1 cut(s)	1051
PmlI	CACGTG	1 cut(s)	1051
PpsI	GAGTC	1 cut(s)	320
Ppu21I	YACGTR	1 cut(s)	1051
PscI	ACATGT	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	109
PspCI	CACGTG	1 cut(s)	1051
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	1 cut(s)	566
PstI	CTGCAG	2 cut(s)	688, 869
PsuI	RGATCY	1 cut(s)	189
PvuII	CAGCTG	2 cut(s)	155, 413
RsaI	GTAC	2 cut(s)	810, 889
RsaNI	GTAC	2 cut(s)	809, 888
RseI	CAYNNNNRTG	2 cut(s)	855, 1049
SaqAI	TTAA	2 cut(s)	21, 900
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	5 cut(s)	52, 189, 455, 589, 1030
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	111, 564
SfaNI	GCATC	3 cut(s)	219, 397, 739
SfcI	CTRYAG	2 cut(s)	684, 865
SinI	GGWCC	1 cut(s)	566
SmiMI	CAYNNNNRTG	2 cut(s)	855, 1049
SmlI	CTYRAG	1 cut(s)	969
SmoI	CTYRAG	1 cut(s)	969
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	6 cut(s)	136, 393, 531, 691, 742, 911
SsiI	CCGC	1 cut(s)	821
SspMI	CTAG	2 cut(s)	321, 519
StyD4I	CCNGG	2 cut(s)	109, 562
TaaI	ACNGT	4 cut(s)	61, 185, 289, 847
TaiI	ACGT	1 cut(s)	1053
TaqII	GACCGA	2 cut(s)	192, 949
TasI	AATT	6 cut(s)	136, 393, 531, 691, 742, 911
TfiI	GAWTC	5 cut(s)	365, 486, 650, 658, 931
Tru1I	TTAA	2 cut(s)	21, 900
Tru9I	TTAA	2 cut(s)	21, 900
TscAI	CASTG	4 cut(s)	129, 250, 693, 874
TseFI	GTSAC	1 cut(s)	1042
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	1042
TspDTI	ATGAA	3 cut(s)	273, 671, 839
TspGWI	ACGGA	2 cut(s)	660, 826
TspRI	CASTG	4 cut(s)	129, 250, 693, 874
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	1 cut(s)	531
XceI	RCATGY	4 cut(s)	95, 431, 514, 518
XmiI	GTMKAC	1 cut(s)	1066
XspI	CTAG	2 cut(s)	321, 519
Zsp2I	ATGCAT	2 cut(s)	429, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.