Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

35904290 .. 35904589

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49520

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCCCAGAAAGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAACATTGTCTTATCCCTTGGAGGCTTGGAGGCATCTTCTCAAACGGACCAGTTTCTCTTATCTCTGTTCTTAACCCTCATCCATTATACTTGTTTCTCCATTTCTTTGTAGCTGCCATCTATGGTGTTGGCCGCTTAATGCTTCCGTTCCCTTCACCTAAACGCATGTGGCTTGGGTTTCTATTGATCTTGGTATGTCAAAGAAATTATTTACACTTCTTTCTTGGGAACACTTTTGTCAATTATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

99

Amino Acids

11.5

Weight (kDa)

10.39

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SE	PF08491	18 - 73	3e-11	Squalene epoxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	178
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	31, 173
BciVI	GTATCC	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	39
BisI	GCNGC	2 cut(s)	162, 181
BlsI	GCNGC	2 cut(s)	163, 182
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmsI	GCATC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	234
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	95
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	4 cut(s)	73, 161, 180, 220
CviKI_1	RGCY	4 cut(s)	73, 161, 180, 220
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	1 cut(s)	217
FaiI	YATR	7 cut(s)	23, 136, 171, 215, 244, 294, 298
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	162, 181
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	162, 181
GluI	GCNGC	2 cut(s)	162, 181
HaeIII	GGCC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	217
HphI	GGTGA	1 cut(s)	195
HpyAV	CCTTC	2 cut(s)	36, 210
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	234
LpnPI	CCDG	2 cut(s)	19, 111
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	90
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	1 cut(s)	76
MluCI	AATT	2 cut(s)	253, 289
MnlI	CCTC	3 cut(s)	63, 71, 135
MseI	TTAA	2 cut(s)	120, 185
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	1 cut(s)	217
NspI	RCATGY	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	163, 182
PspPI	GGNCC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	120, 185
SatI	GCNGC	2 cut(s)	162, 181
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	95
SetI	ASST	2 cut(s)	163, 208
SfaNI	GCATC	1 cut(s)	90
SgeI	CNNG	9 cut(s)	18, 78, 86, 110, 151, 226, 233, 250, 284
SinI	GGWCC	1 cut(s)	95
Sse9I	AATT	2 cut(s)	253, 289
SsiI	CCGC	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	65
TasI	AATT	2 cut(s)	253, 289
TauI	GCSGC	1 cut(s)	183
Tru1I	TTAA	2 cut(s)	120, 185
Tru9I	TTAA	2 cut(s)	120, 185
TseI	GCWGC	1 cut(s)	161
TspGWI	ACGGA	2 cut(s)	108, 183
VpaK11BI	GGWCC	1 cut(s)	95
XceI	RCATGY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.