Rorug03G0275500

Galactose binding lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001191
Physical Location & Seq
Reverse (-)
27229484 .. 27236125
6642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0275500.1

Sequence Viewer

Length: 1587 bp
ATGGCGGGTCACCACTCTTCCTCCTCCTCCTCTGCATCATCTTCCTTTCAGACCTTTGCTTCCCGCCTTCTCTTGCTCCTCACCGTCCTCCCTCTCACTCTCGCCGTCTTTGCTTTCGTTCTCCAATGGCGTGGCGGTCTCAACGATCCCGTCACCCGCTGGTCACCTAACCACCACGAGTTCCCCGGCATGGGCAGCCTCCCCAGGCCCGTAGTCCACGCTTCTTCACGTTCTTCCGACTGCGTTGATCCTCTCGGCCAGAGCCGCTCACCGTCGTTCCCATACTATAGGGACTGGAAGTTTGATTACGCTTCCGATCTGAGGCCCCAGATATGTATTCAAACAAGCACTTCTGCTGGTTTAGAACAAACTTTGCCATGGATCTTCTATCATAAGGTTATTGGAGTTTCGAATTTTCTCCTTTTTGTGGAAGGGCAGGCTGCATCTCCGAATGTAACTAAAGTCTTAGAAACCATTCCAGGAGTGAAGCTTATACACAGGACAAGGGAATTAGAGGAGCAACAAGCTAAAAGCCGAATTTGGAACGAGACTTGGCTGTCAAGCTTCTTCTATAAACCATGTAATTATGAGTTGTTTGTAAAGCAATCCCTTAACATGGAGATGGCTATTGTCATGGCAAGGGAAGCTGGCATGGATTGGATTATCCATCTTGATACTGATGAGCTAATATATCCAGCTGGCACTCGAGAGTACTCTTTGAGACAGTTGTTATCCGATGTGCCTGGAGATGCTGATATGGTTATCTTTCCAAATTATGAAAGTAGTGTAGAGCGAGACGATATCAAGGAACCTTTTAGTGAGGTTTCAATGTTCAAGAAAAACTATGACCATCTTCCAAAAGATGTATATTTTGGCAATTATAGAGAAGCAACAAGGGGTAATCCAAACTATTATTTAACATATGGAAATGGAAAATCAGCTGCTCGAATTCAAGATCACCTCCGCCCTAATGGTGCACACAGATGGCACAATTATATGAAGACACCAAATGAGATTAAATTGGAGGAGGCTGCTATTCTGCATTATACATATCCCAAATTTTCAGATTTGACCTCTAGACGTGATCGGTGTGGTTGCAAACCTACGAAGGAGGATGTTAAAAGATGCTTTATGTTGGAATTTGACAGAGTTGCATTCATAATTGCTTCAACGGCAACACAGGACGAAATGCTTAGCTGGTACCGAGAACGCATTGTGTGGACTGACAAAGCACTAAACTTAAAACTATTGAGAAAGGGCATCTTGACTCGGATTTATGCACCAATGATCATCATACAAGGTTTGAGGGAATCTGGTGTTTTCAGCTCCGTAATTGCATCAGCTGTAAAAGTAACTCTCTCAAAAGATCAATTCTTGTTGTCTGTTGAGAGTAGCAACTCCTCTAGGGAAACCACATATGGAGCAATTACTTCGAGGAAGATTGGTAAAACATTTGATTCCCAAGCAACTGCAAGAAAATTCCTGGAATTCAGAGCCAATACTTCGCACCCTTTGGCAGTTGCACCATTATCTCAGCCTGGCTTGGATGATTTTTCATTTGAAACACAAATGTTTTCTAAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

528

Amino Acids

60.16

Weight (kDa)

8.52

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_92 PF01697 112 - 355 9.6e-07 Glycosyltransferase family 92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 556
Acc65I GGTACC 1 cut(s) 1200
AccB1I GGYRCC 1 cut(s) 1200
AccBSI CCGCTC 1 cut(s) 267
AciI CCGC 6 cut(s) 5, 64, 135, 157, 265, 964
AclWI GGATC 3 cut(s) 140, 242, 389
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 7 cut(s) 412, 537, 948, 1058, 1139, 1478, 1487
AfaI GTAC 2 cut(s) 713, 1202
AfiI CCNNNNNNNGG 5 cut(s) 190, 191, 321, 427, 616
AgsI TTSAA 6 cut(s) 341, 828, 835, 953, 1170, 1562
AjiI CACGTC 1 cut(s) 1082
AjnI CCWGG 5 cut(s) 203, 478, 742, 1482, 1537
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 4 cut(s) 143, 542, 715, 789
Alw44I GTGCAC 1 cut(s) 975
AlwI GGATC 3 cut(s) 140, 242, 389
Ama87I CYCGRG 1 cut(s) 705
AoxI GGCC 3 cut(s) 206, 256, 323
ApaLI GTGCAC 1 cut(s) 975
ApeKI GCWGC 4 cut(s) 195, 440, 941, 1031
ApoI RAATTY 7 cut(s) 412, 537, 948, 1058, 1139, 1478, 1487
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp700I GAANNNNTTC 1 cut(s) 474
Asp718I GGTACC 1 cut(s) 1200
AspS9I GGNCC 2 cut(s) 207, 324
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 5 cut(s) 73, 145, 156, 261, 950
AsuII TTCGAA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 705
BaeGI GKGCMC 1 cut(s) 979
BanI GGYRCC 1 cut(s) 1200
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 1007
Bbv12I GWGCWC 1 cut(s) 979
BbvI GCAGC 4 cut(s) 207, 427, 928, 1018
BccI CCATC 4 cut(s) 616, 675, 858, 978
BceAI ACGGC 2 cut(s) 89, 1188
BcgI CGANNNNNNTGC 2 cut(s) 1413, 1447
BciT130I CCWGG 5 cut(s) 205, 480, 744, 1484, 1539
BclI TGATCA 1 cut(s) 1287
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 4 cut(s) 143, 542, 715, 789
BfaI CTAG 2 cut(s) 1077, 1404
BfmI CTRYAG 1 cut(s) 286
BisI GCNGC 5 cut(s) 196, 265, 441, 942, 1032
BlpI GCTNAGC 1 cut(s) 1193
BlsI GCNGC 5 cut(s) 197, 266, 442, 943, 1033
BmcAI AGTACT 1 cut(s) 713
Bme1390I CCNGG 6 cut(s) 186, 205, 480, 744, 1484, 1539
BmeT110I CYCGRG 1 cut(s) 705
BmgBI CACGTC 1 cut(s) 1082
BmgT120I GGNCC 2 cut(s) 207, 324
BmiI GGNNCC 3 cut(s) 326, 810, 1202
BmrFI CCNGG 6 cut(s) 186, 205, 480, 744, 1484, 1539
BmsI GCATC 6 cut(s) 44, 452, 739, 1115, 1269, 1346
BpiI GAAGAC 1 cut(s) 1007
BpmI CTGGAG 1 cut(s) 765
Bpu1102I GCTNAGC 1 cut(s) 1193
Bpu14I TTCGAA 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 3 cut(s) 184, 203, 377
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 191, 321, 427, 616
Bse1I ACTGG 1 cut(s) 299
BseBI CCWGG 5 cut(s) 205, 480, 744, 1484, 1539
BseDI CCNNGG 3 cut(s) 184, 203, 377
BseGI GGATG 2 cut(s) 1120, 1552
BseLI CCNNNNNNNGG 5 cut(s) 190, 191, 321, 427, 616
BseMII CTCAG 2 cut(s) 311, 1547
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 7 cut(s) 13, 16, 19, 68, 530, 1040, 1390
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 4 cut(s) 207, 427, 928, 1018
BshFI GGCC 3 cut(s) 208, 258, 325
BshNI GGYRCC 1 cut(s) 1200
BsiHKAI GWGCWC 1 cut(s) 979
BsiHKCI CYCGRG 1 cut(s) 705
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 5 cut(s) 190, 191, 321, 427, 616
BsmAI GTCTC 4 cut(s) 143, 542, 715, 789
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 1154
BsnI GGCC 3 cut(s) 208, 258, 325
Bso31I GGTCTC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 705
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 979
Bsp143I GATC 8 cut(s) 145, 247, 316, 381, 955, 1084, 1287, 1366
Bsp1720I GCTNAGC 1 cut(s) 1193
Bsp19I CCATGG 1 cut(s) 377
BspACI CCGC 6 cut(s) 5, 64, 135, 157, 265, 964
BspANI GGCC 3 cut(s) 208, 258, 325
BspCNI CTCAG 2 cut(s) 312, 1546
BspLI GGNNCC 3 cut(s) 326, 810, 1202
BspPI GGATC 3 cut(s) 140, 242, 389
BspT104I TTCGAA 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 1200
BspTNI GGTCTC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 184, 203, 377
BssMI GATC 8 cut(s) 145, 247, 316, 381, 955, 1084, 1287, 1366
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 5 cut(s) 205, 480, 744, 1484, 1539
Bst4CI ACNGT 3 cut(s) 85, 273, 726
Bst6I CTCTTC 1 cut(s) 22
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 3 cut(s) 438, 649, 700
BstDEI CTNAG 4 cut(s) 320, 466, 1193, 1533
BstDSI CCRYGG 1 cut(s) 377
BstEII GGTNACC 2 cut(s) 8, 162
BstF5I GGATG 2 cut(s) 1120, 1552
BstKTI GATC 8 cut(s) 148, 250, 319, 384, 958, 1087, 1290, 1369
BstMAI GTCTC 4 cut(s) 143, 542, 715, 789
BstMBI GATC 8 cut(s) 145, 247, 316, 381, 955, 1084, 1287, 1366
BstMWI GCNNNNNNNGC 5 cut(s) 110, 195, 264, 644, 1172
BstNI CCWGG 5 cut(s) 205, 480, 744, 1484, 1539
BstPI GGTNACC 2 cut(s) 8, 162
BstSCI CCNGG 6 cut(s) 184, 203, 478, 742, 1482, 1537
BstSFI CTRYAG 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 979
BstV1I GCAGC 4 cut(s) 207, 427, 928, 1018
BstV2I GAAGAC 1 cut(s) 1007
BstX2I RGATCY 1 cut(s) 381
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 3 cut(s) 208, 258, 325
BtgI CCRYGG 1 cut(s) 377
BtrI CACGTC 1 cut(s) 1082
BtsCI GGATG 2 cut(s) 1120, 1552
Cac8I GCNNGC 3 cut(s) 438, 649, 700
Cfr13I GGNCC 2 cut(s) 207, 324
Csp6I GTAC 2 cut(s) 712, 1201
CviAII CATG 6 cut(s) 190, 378, 579, 616, 634, 652
CviQI GTAC 2 cut(s) 712, 1201
DdeI CTNAG 4 cut(s) 320, 466, 1193, 1533
DpnI GATC 8 cut(s) 147, 249, 318, 383, 957, 1086, 1289, 1368
DpnII GATC 8 cut(s) 145, 247, 316, 381, 955, 1084, 1287, 1366
DrdI GACNNNNNNGTC 1 cut(s) 556
DseDI GACNNNNNNGTC 1 cut(s) 556
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 953
Eco130I CCWWGG 1 cut(s) 377
Eco31I GGTCTC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 802
Eco88I CYCGRG 1 cut(s) 705
Eco91I GGTNACC 2 cut(s) 8, 162
EcoO109I RGGNCCY 1 cut(s) 324
EcoO65I GGTNACC 2 cut(s) 8, 162
EcoRI GAATTC 2 cut(s) 948, 1487
EcoRII CCWGG 5 cut(s) 203, 478, 742, 1482, 1537
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 6 cut(s) 193, 381, 582, 619, 637, 655
FalI AAGNNNNNCTT 2 cut(s) 1247, 1279
FaqI GGGAC 1 cut(s) 305
FatI CATG 6 cut(s) 189, 377, 578, 615, 633, 651
FauI CCCGC 2 cut(s) 71, 164
FauNDI CATATG 2 cut(s) 922, 1417
FbaI TGATCA 1 cut(s) 1287
Fnu4HI GCNGC 5 cut(s) 196, 265, 441, 942, 1032
FokI GGATG 2 cut(s) 1127, 1559
Fsp4HI GCNGC 5 cut(s) 196, 265, 441, 942, 1032
FspBI CTAG 2 cut(s) 1077, 1404
GluI GCNGC 5 cut(s) 196, 265, 441, 942, 1032
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 3 cut(s) 208, 258, 325
HapII CCGG 1 cut(s) 186
Hin1II CATG 6 cut(s) 193, 381, 582, 619, 637, 655
HindIII AAGCTT 2 cut(s) 488, 562
HinfI GANTC 3 cut(s) 1267, 1310, 1457
HpaII CCGG 1 cut(s) 186
HphI GGTGA 5 cut(s) 73, 145, 156, 261, 950
Hpy166II GTNNAC 3 cut(s) 217, 977, 1221
Hpy188I TCNGA 9 cut(s) 51, 238, 316, 321, 450, 736, 1066, 1272, 1493
Hpy188III TCNNGA 6 cut(s) 671, 707, 835, 953, 1077, 1264
Hpy8I GTNNAC 3 cut(s) 217, 977, 1221
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 3 cut(s) 77, 425, 1102
HpyCH4III ACNGT 3 cut(s) 85, 273, 726
HpyCH4IV ACGT 2 cut(s) 229, 1081
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 195, 264, 644, 1172
HpyF3I CTNAG 4 cut(s) 320, 466, 1193, 1533
HpySE526I ACGT 2 cut(s) 229, 1081
Hsp92II CATG 6 cut(s) 193, 381, 582, 619, 637, 655
KpnI GGTACC 1 cut(s) 1204
Ksp22I TGATCA 1 cut(s) 1287
Kzo9I GATC 8 cut(s) 145, 247, 316, 381, 955, 1084, 1287, 1366
LmnI GCTCC 4 cut(s) 81, 517, 1331, 1421
Lsp1109I GCAGC 4 cut(s) 207, 427, 928, 1018
LweI GCATC 6 cut(s) 44, 452, 739, 1115, 1269, 1346
MaeI CTAG 2 cut(s) 1077, 1404
MaeII ACGT 2 cut(s) 229, 1081
MaeIII GTNAC 5 cut(s) 8, 151, 162, 454, 1351
MalI GATC 8 cut(s) 147, 249, 318, 383, 957, 1086, 1289, 1368
MbiI CCGCTC 1 cut(s) 267
MboI GATC 8 cut(s) 145, 247, 316, 381, 955, 1084, 1287, 1366
MboII GAAGA 9 cut(s) 9, 33, 216, 225, 376, 559, 845, 1012, 1450
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 979
MlyI GAGTC 1 cut(s) 1261
MmeI TCCRAC 2 cut(s) 261, 1116
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 5 cut(s) 612, 917, 1017, 1119, 1241
MslI CAYNNNNRTG 2 cut(s) 620, 982
MspA1I CMGCKG 4 cut(s) 159, 698, 941, 1343
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 6 cut(s) 186, 205, 480, 744, 1484, 1539
Mva1269I GAATGC 1 cut(s) 1154
MvaI CCWGG 5 cut(s) 205, 480, 744, 1484, 1539
MwoI GCNNNNNNNGC 5 cut(s) 110, 195, 264, 644, 1172
NciI CCSGG 1 cut(s) 186
NcoI CCATGG 1 cut(s) 377
NdeI CATATG 2 cut(s) 922, 1417
NdeII GATC 8 cut(s) 145, 247, 316, 381, 955, 1084, 1287, 1366
NlaIII CATG 6 cut(s) 193, 381, 582, 619, 637, 655
NlaIV GGNNCC 3 cut(s) 326, 810, 1202
NmeAIII GCCGAG 1 cut(s) 234
NmuCI GTSAC 3 cut(s) 8, 151, 162
NspV TTCGAA 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 705
PctI GAATGC 1 cut(s) 1154
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 2 cut(s) 1310, 1457
PfoI TCCNGGA 2 cut(s) 478, 1482
PkrI GCNGC 5 cut(s) 197, 266, 442, 943, 1033
PleI GAGTC 1 cut(s) 1261
PpsI GAGTC 1 cut(s) 1261
Psp6I CCWGG 5 cut(s) 203, 478, 742, 1482, 1537
PspEI GGTNACC 2 cut(s) 8, 162
PspGI CCWGG 5 cut(s) 203, 478, 742, 1482, 1537
PspN4I GGNNCC 3 cut(s) 326, 810, 1202
PspPI GGNCC 2 cut(s) 207, 324
PsuI RGATCY 1 cut(s) 381
PvuII CAGCTG 3 cut(s) 698, 941, 1343
RsaI GTAC 2 cut(s) 713, 1202
RsaNI GTAC 2 cut(s) 712, 1201
RseI CAYNNNNRTG 2 cut(s) 620, 982
SaqAI TTAA 5 cut(s) 612, 917, 1017, 1119, 1241
SatI GCNGC 5 cut(s) 196, 265, 441, 942, 1032
Sau3AI GATC 8 cut(s) 145, 247, 316, 381, 955, 1084, 1287, 1366
Sau96I GGNCC 2 cut(s) 207, 324
ScaI AGTACT 1 cut(s) 713
SchI GAGTC 1 cut(s) 1261
ScrFI CCNGG 6 cut(s) 186, 205, 480, 744, 1484, 1539
SduI GDGCHC 1 cut(s) 979
SfaNI GCATC 6 cut(s) 44, 452, 739, 1115, 1269, 1346
SfcI CTRYAG 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 705
SfuI TTCGAA 1 cut(s) 410
SlaI CTCGAG 1 cut(s) 705
SmiMI CAYNNNNRTG 2 cut(s) 620, 982
SmlI CTYRAG 1 cut(s) 705
SmoI CTYRAG 1 cut(s) 705
SsiI CCGC 6 cut(s) 5, 64, 135, 157, 265, 964
SspMI CTAG 2 cut(s) 1077, 1404
StyD4I CCNGG 6 cut(s) 184, 203, 478, 742, 1482, 1537
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 3 cut(s) 85, 273, 726
TaiI ACGT 2 cut(s) 232, 1084
TaqI TCGA 4 cut(s) 410, 706, 946, 1433
TatI WGTACW 1 cut(s) 711
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 2 cut(s) 1310, 1457
Tru1I TTAA 5 cut(s) 612, 917, 1017, 1119, 1241
Tru9I TTAA 5 cut(s) 612, 917, 1017, 1119, 1241
TseFI GTSAC 3 cut(s) 8, 151, 162
TseI GCWGC 4 cut(s) 195, 440, 941, 1031
Tsp45I GTSAC 3 cut(s) 8, 151, 162
TspDTI ATGAA 4 cut(s) 792, 1013, 1147, 1545
TspGWI ACGGA 1 cut(s) 1318
VneI GTGCAC 1 cut(s) 975
XapI RAATTY 7 cut(s) 412, 537, 948, 1058, 1139, 1478, 1487
XbaI TCTAGA 1 cut(s) 1076
XhoI CTCGAG 1 cut(s) 705
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 2 cut(s) 1077, 1404
ZrmI AGTACT 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.