Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Forward (+)

10860908 .. 10863595

Gene Structure 2688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011600

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCAACCCAAGTATGGTCACTTAATGGAACTCCATAAAGCTATTAAGTTATGTGAGCAAGCTCTGCTGAATACTGATCTAACTGTTACATCCTTAGGGAGATATCAACAGGCACATGTATTCTCTTCAAAACCAGGAGGTTGTGCAGCGTTTCTCTCAAACTGCAATGCAATCTCAACTGCAACGGTGACTTTCAATGACCGAAATTGTGAGATCCCTGCTTGTTCCATCAGCGTCCTTCCAGACTGCGAAAATGTTGTATTCAACACTGCCAAAGTAAATGAAATAAACAATGGTGATACAACTCTCACAGTCATTGGTTTCTTAGATAAGTTGAACATCACTAGAGACTCCAATGATTATCTATGGTACACCACCAGTCCATTTGAATCATGTATGCGTGGTGGTAAGCATCCAATTCTCACTATGTTGTCAGCTGGGAACACTATGCATGTCTTTGTCAATGACCAGCTCTCAGGATCAACTTATGGGACTTTGCAAGACCAGAGATTCACTTTTACAGGAGATGTAAACATGCATGCTAGGGTGAATAAAATTTTGCTTCTAAGTGTAGCTGTTGGATTACAGGGACCAGTTGTTCCACAAGGATTAGATCAAGGAAGTAGAGATTTATCAGGGCAGATATGGTCATACAAGGTTGGGCTAAACGGAGAATCCTTGAATCTCGGTTCTCCAACTTCCACCTCTGCAGTGAATTGGACGAGGGTGTCTAAGAACACAGAATCAACAGCCAATGACTTGGGGACGAGCCTTTGGCTTTGGACATGGAGCATGGGGAAGGGTGAAGTACGGATAAATGGGGGGAGCATTGGAAGATACTGGACTGTTCATGCTAATGGTTACTGCAGCGCGTGCAGTTATTTTGGTACATTCAGGATTAACAAGTGCCAATTGGTTGTCTCCAACCGACTCAACAATGTCTTGGCTCAAGCCGTCCTAAAATCTGTTGGTGGTTTTGAGGAGCTTGCTGGCGATGTTACAAAGATTGATCTTCTGAAAGTAACCCACGTGTGGAGAAATGGCAGACCAAGAACTAAGGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

356

Amino Acids

38.8

Weight (kDa)

8.63

Isoelectric Point (pI)

27.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHD	PF17834	37 - 93	3.7e-19	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	253 - 283	6.5e-06	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	727
AccII	CGCG	1 cut(s)	872
AclWI	GGATC	2 cut(s)	208, 487
AcsI	RAATTY	1 cut(s)	555
AcvI	CACGTG	1 cut(s)	1030
AfaI	GTAC	3 cut(s)	371, 810, 889
AfiI	CCNNNNNNNGG	2 cut(s)	14, 1032
AflIII	ACRYGT	2 cut(s)	115, 1029
AgsI	TTSAA	6 cut(s)	129, 196, 265, 337, 389, 682
AjnI	CCWGG	1 cut(s)	133
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
AluBI	AGCT	6 cut(s)	41, 62, 437, 472, 575, 985
AluI	AGCT	6 cut(s)	41, 62, 437, 472, 575, 985
Alw26I	GTCTC	2 cut(s)	342, 925
AlwI	GGATC	2 cut(s)	208, 487
ApeKI	GCWGC	2 cut(s)	146, 867
ApoI	RAATTY	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	872
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	4 cut(s)	199, 308, 559, 815
AvaII	GGWCC	1 cut(s)	590
AxyI	CCTNAGG	1 cut(s)	94
BbrPI	CACGTG	1 cut(s)	1030
BbvI	GCAGC	2 cut(s)	158, 879
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	938
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	342, 925
BfaI	CTAG	2 cut(s)	345, 543
BfmI	CTRYAG	2 cut(s)	708, 865
BisI	GCNGC	2 cut(s)	147, 868
BlsI	GCNGC	2 cut(s)	148, 869
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	590
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	933
BsaAI	YACGTR	1 cut(s)	1030
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 1032
Bse1I	ACTGG	3 cut(s)	378, 593, 845
Bse21I	CCTNAGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	89, 412
BseLI	CCNNNNNNNGG	2 cut(s)	14, 1032
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	3 cut(s)	378, 593, 845
BseRI	GAGGAG	1 cut(s)	995
BseXI	GCAGC	2 cut(s)	158, 879
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	2 cut(s)	165, 895
Bsh1236I	CGCG	1 cut(s)	872
BslFI	GGGAC	3 cut(s)	505, 603, 778
BslI	CCNNNNNNNGG	2 cut(s)	14, 1032
BsmAI	GTCTC	2 cut(s)	342, 925
BsmFI	GGGAC	3 cut(s)	505, 603, 778
Bsp143I	GATC	5 cut(s)	76, 213, 479, 613, 1009
BspCNI	CTCAG	1 cut(s)	488
BspFNI	CGCG	1 cut(s)	872
BspLI	GGNNCC	1 cut(s)	591
BspMAI	CTGCAG	2 cut(s)	712, 869
BspPI	GGATC	2 cut(s)	208, 487
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	378, 593, 845
BssMI	GATC	5 cut(s)	76, 213, 479, 613, 1009
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	4 cut(s)	85, 187, 313, 847
Bst6I	CTCTTC	1 cut(s)	130
BstAPI	GCANNNNNTGC	2 cut(s)	64, 873
BstBAI	YACGTR	1 cut(s)	1030
BstC8I	GCNNGC	5 cut(s)	60, 540, 874, 987, 991
BstDEI	CTNAG	6 cut(s)	94, 325, 475, 566, 732, 1056
BstF5I	GGATG	2 cut(s)	89, 412
BstFNI	CGCG	1 cut(s)	872
BstHHI	GCGC	1 cut(s)	872
BstKTI	GATC	5 cut(s)	79, 216, 482, 616, 1012
BstMAI	GTCTC	2 cut(s)	342, 925
BstMBI	GATC	5 cut(s)	76, 213, 479, 613, 1009
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 873
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	4 cut(s)	119, 455, 538, 542
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	2 cut(s)	708, 865
BstUI	CGCG	1 cut(s)	872
BstV1I	GCAGC	2 cut(s)	158, 879
BstX2I	RGATCY	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	94
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	2 cut(s)	89, 412
BtsI	GCAGTG	2 cut(s)	267, 717
BtsIMutI	CAGTG	2 cut(s)	267, 717
Cac8I	GCNNGC	5 cut(s)	60, 540, 874, 987, 991
CfoI	GCGC	1 cut(s)	872
Cfr13I	GGNCC	1 cut(s)	590
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	3 cut(s)	370, 809, 888
CviAII	CATG	8 cut(s)	116, 393, 452, 535, 539, 786, 793, 851
CviQI	GTAC	3 cut(s)	370, 809, 888
DdeI	CTNAG	6 cut(s)	94, 325, 475, 566, 732, 1056
DpnI	GATC	5 cut(s)	78, 215, 481, 615, 1011
DpnII	GATC	5 cut(s)	76, 213, 479, 613, 1009
DrdI	GACNNNNNNGTC	1 cut(s)	727
DseDI	GACNNNNNNGTC	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	590
Eco72I	CACGTG	1 cut(s)	1030
Eco81I	CCTNAGG	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	104
EcoT22I	ATGCAT	2 cut(s)	453, 540
FaeI	CATG	8 cut(s)	119, 396, 455, 538, 542, 789, 796, 854
FaqI	GGGAC	3 cut(s)	505, 603, 778
FatI	CATG	8 cut(s)	115, 392, 451, 534, 538, 785, 792, 850
Fnu4HI	GCNGC	2 cut(s)	147, 868
FokI	GGATG	2 cut(s)	76, 399
Fsp4HI	GCNGC	2 cut(s)	147, 868
FspBI	CTAG	2 cut(s)	345, 543
GlaI	GCGC	1 cut(s)	871
GluI	GCNGC	2 cut(s)	147, 868
GsaI	CCCAGC	1 cut(s)	441
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	1 cut(s)	872
Hin1II	CATG	8 cut(s)	119, 396, 455, 538, 542, 789, 796, 854
Hin6I	GCGC	1 cut(s)	870
HinP1I	GCGC	1 cut(s)	870
HinfI	GANTC	7 cut(s)	350, 389, 510, 674, 682, 743, 930
HphI	GGTGA	4 cut(s)	199, 308, 559, 815
Hpy166II	GTNNAC	2 cut(s)	372, 532
Hpy188I	TCNGA	1 cut(s)	1017
Hpy188III	TCNNGA	3 cut(s)	242, 477, 895
Hpy8I	GTNNAC	2 cut(s)	372, 532
HpyAV	CCTTC	2 cut(s)	248, 793
HpyCH4III	ACNGT	4 cut(s)	85, 187, 313, 847
HpyCH4IV	ACGT	1 cut(s)	1029
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 873
HpyF3I	CTNAG	6 cut(s)	94, 325, 475, 566, 732, 1056
HpySE526I	ACGT	1 cut(s)	1029
Hsp92II	CATG	8 cut(s)	119, 396, 455, 538, 542, 789, 796, 854
HspAI	GCGC	1 cut(s)	870
Kzo9I	GATC	5 cut(s)	76, 213, 479, 613, 1009
LmnI	GCTCC	3 cut(s)	789, 825, 982
Lsp1109I	GCAGC	2 cut(s)	158, 879
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	2 cut(s)	345, 543
MaeII	ACGT	1 cut(s)	1029
MaeIII	GTNAC	6 cut(s)	17, 85, 187, 860, 997, 1021
MalI	GATC	5 cut(s)	78, 215, 481, 615, 1011
MboI	GATC	5 cut(s)	76, 213, 479, 613, 1009
MboII	GAAGA	3 cut(s)	117, 846, 1004
MfeI	CAATTG	1 cut(s)	911
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	5 cut(s)	205, 417, 555, 715, 911
MlyI	GAGTC	2 cut(s)	344, 924
MmeI	TCCRAC	3 cut(s)	559, 719, 948
MnlI	CCTC	4 cut(s)	131, 715, 717, 973
Mph1103I	ATGCAT	2 cut(s)	453, 540
MseI	TTAA	3 cut(s)	23, 45, 900
MslI	CAYNNNNRTG	1 cut(s)	855
MspA1I	CMGCKG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	911
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	872
MwoI	GCNNNNNNNGC	2 cut(s)	64, 873
NdeII	GATC	5 cut(s)	76, 213, 479, 613, 1009
NlaIII	CATG	8 cut(s)	119, 396, 455, 538, 542, 789, 796, 854
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	2 cut(s)	17, 187
NsiI	ATGCAT	2 cut(s)	453, 540
NspI	RCATGY	4 cut(s)	119, 455, 538, 542
PaeI	GCATGC	1 cut(s)	542
PciI	ACATGT	1 cut(s)	115
PfeI	GAWTC	5 cut(s)	389, 510, 674, 682, 743
PkrI	GCNGC	2 cut(s)	148, 869
PleI	GAGTC	2 cut(s)	344, 924
PmaCI	CACGTG	1 cut(s)	1030
PmlI	CACGTG	1 cut(s)	1030
PpsI	GAGTC	2 cut(s)	344, 924
Ppu21I	YACGTR	1 cut(s)	1030
PscI	ACATGT	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	133
PspCI	CACGTG	1 cut(s)	1030
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	590
PstI	CTGCAG	2 cut(s)	712, 869
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	3 cut(s)	371, 810, 889
RsaNI	GTAC	3 cut(s)	370, 809, 888
RseI	CAYNNNNRTG	1 cut(s)	855
SaqAI	TTAA	3 cut(s)	23, 45, 900
SatI	GCNGC	2 cut(s)	147, 868
Sau3AI	GATC	5 cut(s)	76, 213, 479, 613, 1009
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	2 cut(s)	344, 924
ScrFI	CCNGG	1 cut(s)	135
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	2 cut(s)	708, 865
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	855
SmlI	CTYRAG	1 cut(s)	948
SmoI	CTYRAG	1 cut(s)	948
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	5 cut(s)	205, 417, 555, 715, 911
SspMI	CTAG	2 cut(s)	345, 543
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	4 cut(s)	85, 187, 313, 847
TaiI	ACGT	1 cut(s)	1032
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	5 cut(s)	205, 417, 555, 715, 911
TfiI	GAWTC	5 cut(s)	389, 510, 674, 682, 743
Tru1I	TTAA	3 cut(s)	23, 45, 900
Tru9I	TTAA	3 cut(s)	23, 45, 900
TscAI	CASTG	2 cut(s)	274, 717
TseFI	GTSAC	2 cut(s)	17, 187
TseI	GCWGC	2 cut(s)	146, 867
Tsp45I	GTSAC	2 cut(s)	17, 187
TspDTI	ATGAA	2 cut(s)	297, 839
TspGWI	ACGGA	2 cut(s)	684, 826
TspRI	CASTG	2 cut(s)	274, 717
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	1 cut(s)	555
XceI	RCATGY	4 cut(s)	119, 455, 538, 542
XspI	CTAG	2 cut(s)	345, 543
Zsp2I	ATGCAT	2 cut(s)	453, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.