Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Forward (+)

32217952 .. 32220160

Gene Structure 2209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31631

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAATATGGCACATGTATTCTCTTCAAATCCAGGAGGTTGTGCAGCGTTTCTCTCAAACTGCAATGCAATCTCAGCTGCAACGGTGACTTTCAATGACCGAAACTGTGAGATCCCTGCTTGTTCCATCAGCGTCCTTCCAGACTGCGAAAATTTTGTATTCAACACTGCCAAAAATTTTGCAGAACTTGATGTTTTTGGTGTCGACATAAGTCCATCTGAATCATTTTTGCGTGGTGGTAAGCATCCAATTCTCACTATGTTGTCAGCTGGGAACGCTATGCATGTCTTTGTCAATGACCAGCTCTCAGTTGTTCAACAAGGATTAGATCAAGGAAGTAGAGATTTATCAGGGCAGATATGGTCATACAAGGTTGGGCTAAATGGAGAATCCATGAATCTCAGTTCTCCAACTTCCACCTCTGCAGTGAATTGGACGAGGGTGTCTAAGGACACAGAATCAACAGCCAATGACTTGTCCAATTTTGATGCACCTGAAGGGGACGAGCCTTTGGCTTTGGACATGGGGAGCATGGGGAAGGGTGAAGTATGGATAAATGGGGGGAGCATTGGAAGATACTGGACTGTTCATGCTAATGGTAACTGTAGCGCATGCATTTATTTTGGTATATTCAGGATTGACAAGTGCCAATTTGGTTGTCTCCAACCGACTCAACAATGGTATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

229

Amino Acids

24.69

Weight (kDa)

4.65

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHD	PF17834	4 - 58	1.4e-17	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	161 - 228	6.1e-15	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	151, 175
AcuI	CTGAAG	1 cut(s)	516
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	4 cut(s)	27, 94, 163, 317
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	3 cut(s)	77, 269, 304
AluI	AGCT	3 cut(s)	77, 269, 304
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	44, 77
ApoI	RAATTY	2 cut(s)	151, 175
AspLEI	GCGC	1 cut(s)	611
AsuHPI	GGTGA	2 cut(s)	97, 554
BbvI	GCAGC	2 cut(s)	56, 64
BccI	CCATC	2 cut(s)	134, 223
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	665
BfmI	CTRYAG	2 cut(s)	423, 604
BisI	GCNGC	2 cut(s)	45, 78
BlsI	GCNGC	2 cut(s)	46, 79
Bme1390I	CCNGG	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	253, 478
BoxI	GACNNNNGTC	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	3 cut(s)	87, 321, 415
BseNI	ACTGG	1 cut(s)	584
BseXI	GCAGC	2 cut(s)	56, 64
BseYI	CCCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	515
Bsp143I	GATC	2 cut(s)	111, 328
BspCNI	CTCAG	3 cut(s)	86, 320, 414
BspMAI	CTGCAG	1 cut(s)	427
BspPI	GGATC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	584
BssMI	GATC	2 cut(s)	111, 328
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	4 cut(s)	85, 107, 586, 605
Bst6I	CTCTTC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	4 cut(s)	73, 307, 401, 447
BstF5I	GGATG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	2 cut(s)	114, 331
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	2 cut(s)	111, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 275
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	3 cut(s)	17, 287, 615
BstPAI	GACNNNNGTC	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	2 cut(s)	423, 604
BstV1I	GCAGC	2 cut(s)	56, 64
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	2 cut(s)	165, 432
BtsIMutI	CAGTG	2 cut(s)	165, 432
Cac8I	GCNNGC	1 cut(s)	613
CfoI	GCGC	1 cut(s)	611
CseI	GACGC	1 cut(s)	121
CviAII	CATG	7 cut(s)	14, 284, 394, 523, 532, 590, 612
CviJI	RGCY	7 cut(s)	77, 269, 304, 379, 467, 508, 515
CviKI_1	RGCY	7 cut(s)	77, 269, 304, 379, 467, 508, 515
DdeI	CTNAG	4 cut(s)	73, 307, 401, 447
DpnI	GATC	2 cut(s)	113, 330
DpnII	GATC	2 cut(s)	111, 328
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	31
EcoT22I	ATGCAT	2 cut(s)	285, 617
FaeI	CATG	7 cut(s)	17, 287, 397, 526, 535, 593, 615
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	7 cut(s)	13, 283, 393, 522, 531, 589, 611
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	45, 78
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	45, 78
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	2 cut(s)	45, 78
GsaI	CCCAGC	1 cut(s)	273
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	611
Hin1II	CATG	7 cut(s)	17, 287, 397, 526, 535, 593, 615
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	5 cut(s)	221, 389, 397, 458, 670
HphI	GGTGA	2 cut(s)	97, 554
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	2 cut(s)	140, 634
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	146, 491, 532
HpyCH4III	ACNGT	4 cut(s)	85, 107, 586, 605
HpyCH4V	TGCA	9 cut(s)	44, 63, 68, 80, 182, 283, 425, 491, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 275
HpyF3I	CTNAG	4 cut(s)	73, 307, 401, 447
Hsp92II	CATG	7 cut(s)	17, 287, 397, 526, 535, 593, 615
HspAI	GCGC	1 cut(s)	609
Kzo9I	GATC	2 cut(s)	111, 328
LmnI	GCTCC	2 cut(s)	528, 564
Lsp1109I	GCAGC	2 cut(s)	56, 64
LweI	GCATC	2 cut(s)	253, 478
MaeIII	GTNAC	2 cut(s)	85, 599
MalI	GATC	2 cut(s)	113, 330
MboI	GATC	2 cut(s)	111, 328
MboII	GAAGA	2 cut(s)	15, 585
MflI	RGATCY	1 cut(s)	111
MluCI	AATT	6 cut(s)	151, 175, 249, 430, 481, 650
MlyI	GAGTC	1 cut(s)	664
MmeI	TCCRAC	2 cut(s)	434, 688
MnlI	CCTC	3 cut(s)	29, 430, 432
Mph1103I	ATGCAT	2 cut(s)	285, 617
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	2 cut(s)	77, 269
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	74, 275
NdeII	GATC	2 cut(s)	111, 328
NlaIII	CATG	7 cut(s)	17, 287, 397, 526, 535, 593, 615
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	2 cut(s)	285, 617
NspI	RCATGY	3 cut(s)	17, 287, 615
PaeI	GCATGC	1 cut(s)	615
PciI	ACATGT	1 cut(s)	13
PfeI	GAWTC	4 cut(s)	221, 389, 397, 458
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	46, 79
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
PscI	ACATGT	1 cut(s)	13
PshAI	GACNNNNGTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	111
PvuII	CAGCTG	2 cut(s)	77, 269
RseI	CAYNNNNRTG	1 cut(s)	594
SalI	GTCGAC	1 cut(s)	203
SatI	GCNGC	2 cut(s)	45, 78
Sau3AI	GATC	2 cut(s)	111, 328
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	7 cut(s)	40, 79, 271, 306, 375, 422, 496
SfaNI	GCATC	2 cut(s)	253, 478
SfcI	CTRYAG	2 cut(s)	423, 604
SmiMI	CAYNNNNRTG	1 cut(s)	594
SphI	GCATGC	1 cut(s)	615
Sse9I	AATT	6 cut(s)	151, 175, 249, 430, 481, 650
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	4 cut(s)	85, 107, 586, 605
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	6 cut(s)	151, 175, 249, 430, 481, 650
TfiI	GAWTC	4 cut(s)	221, 389, 397, 458
TscAI	CASTG	2 cut(s)	172, 432
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	2 cut(s)	44, 77
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	17, 410, 578
TspRI	CASTG	2 cut(s)	172, 432
XapI	RAATTY	2 cut(s)	151, 175
XceI	RCATGY	3 cut(s)	17, 287, 615
XmiI	GTMKAC	1 cut(s)	204
Zsp2I	ATGCAT	2 cut(s)	285, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.