Rroxscaffold_2G00137690

Galactose binding lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001191
Physical Location & Seq
Reverse (-)
75684801 .. 75690163
5363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137690.1

Sequence Viewer

Length: 537 bp
ATGAATTGGAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCCTGGGGGATATCTCAAATTGATTGCGTTGGGTCTTGAAGATTGTGCAAATGAGTCGATTGATGCCCAGAAAGTGTCTGGTTATGCTCTTACAAAGATGGGAAGGATACAACACTCTGCCATCTATGGTGTTGGCCGCTTAATGCTTCCGTTCCCTTCACCTAAACGCATGTGGCTTGGGTTTCTATTGATCTTGAGTGCATCACACATCATATTCAGTCTCTTAAGATACTGGACTGTTCATGCTAATGGTAACTGCAACGCGTGCAATTATTTTGGTACATTCAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCGACTCAACAATGGTATCATGTTCCTCGGTATTGGCTCAAGCCATCCCAGAATTTGTTGGAGGTATTTGAGGAGCTTGCTGGCGATGTTACAAAGATTGATCTTTTGAAAGTCACCCACGTGTTGAGAAATGGCAGACCAAGAACCGAGGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

178

Amino Acids

20.21

Weight (kDa)

9.16

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BetaGal_gal-bd PF21467 95 - 144 4.8e-06 Beta-galactosidase, galactose-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 323
AciI CCGC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 430
AcvI CACGTG 1 cut(s) 499
AfaI GTAC 1 cut(s) 340
AflII CTTAAG 1 cut(s) 283
AflIII ACRYGT 2 cut(s) 321, 498
AgsI TTSAA 2 cut(s) 98, 487
AjnI CCWGG 1 cut(s) 61
AleI CACNNNNGTG 1 cut(s) 497
AluBI AGCT 2 cut(s) 52, 454
AluI AGCT 2 cut(s) 52, 454
Alw26I GTCTC 2 cut(s) 284, 377
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 430
AsuHPI GGTGA 2 cut(s) 210, 484
BaeI ACNNNNGTAYC 2 cut(s) 377, 410
BbrPI CACGTG 1 cut(s) 499
BbvI GCAGC 1 cut(s) 70
BccI CCATC 3 cut(s) 151, 188, 430
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BciT130I CCWGG 1 cut(s) 63
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 2 cut(s) 284, 377
BfrI CTTAAG 1 cut(s) 283
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 2 cut(s) 59, 196
BlsI GCNGC 2 cut(s) 60, 197
Bme1390I CCNGG 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 2 cut(s) 112, 269
BpuEI CTTGAG 3 cut(s) 43, 274, 401
BsaAI YACGTR 1 cut(s) 499
BsaJI CCNNGG 3 cut(s) 62, 404, 525
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 62, 404, 525
BseGI GGATG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 1 cut(s) 195
BsmAI GTCTC 2 cut(s) 284, 377
BsnI GGCC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 249, 478
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 195
BspFNI CGCG 1 cut(s) 323
BspTI CTTAAG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 3 cut(s) 62, 404, 525
BssMI GATC 2 cut(s) 249, 478
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 298
BstAFI CTTAAG 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 499
BstC8I GCNNGC 3 cut(s) 325, 456, 460
BstF5I GGATG 1 cut(s) 422
BstFNI CGCG 1 cut(s) 323
BstKTI GATC 2 cut(s) 252, 481
BstMAI GTCTC 2 cut(s) 284, 377
BstMBI GATC 2 cut(s) 249, 478
BstMWI GCNNNNNNNGC 2 cut(s) 58, 324
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 61
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 70
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 1 cut(s) 422
Cac8I GCNNGC 3 cut(s) 325, 456, 460
Csp6I GTAC 1 cut(s) 339
CviAII CATG 3 cut(s) 229, 302, 398
CviJI RGCY 8 cut(s) 31, 52, 61, 195, 235, 415, 421, 454
CviKI_1 RGCY 8 cut(s) 31, 52, 61, 195, 235, 415, 421, 454
CviQI GTAC 1 cut(s) 339
DpnI GATC 2 cut(s) 251, 480
DpnII GATC 2 cut(s) 249, 478
EaeI YGGCCR 1 cut(s) 193
Eco32I GATATC 1 cut(s) 71
Eco72I CACGTG 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 61
EcoRV GATATC 1 cut(s) 71
FaeI CATG 3 cut(s) 232, 305, 401
FaiI YATR 6 cut(s) 144, 186, 230, 272, 303, 399
FatI CATG 3 cut(s) 228, 301, 397
Fnu4HI GCNGC 2 cut(s) 59, 196
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 59, 196
GluI GCNGC 2 cut(s) 59, 196
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 3 cut(s) 232, 305, 401
HinfI GANTC 2 cut(s) 113, 382
HphI GGTGA 2 cut(s) 210, 484
Hpy188III TCNNGA 4 cut(s) 22, 95, 253, 346
HpyAV CCTTC 2 cut(s) 156, 225
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 6 cut(s) 14, 58, 107, 260, 318, 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 324
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 3 cut(s) 232, 305, 401
Kzo9I GATC 2 cut(s) 249, 478
LmnI GCTCC 2 cut(s) 49, 451
LpnPI CCDG 9 cut(s) 45, 48, 75, 123, 140, 277, 331, 440, 444
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 112, 269
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 3 cut(s) 311, 466, 490
MalI GATC 2 cut(s) 251, 480
MboI GATC 2 cut(s) 249, 478
MboII GAAGA 1 cut(s) 110
MluCI AATT 6 cut(s) 4, 39, 77, 328, 362, 430
MluI ACGCGT 1 cut(s) 321
MlyI GAGTC 2 cut(s) 122, 376
MmeI TCCRAC 2 cut(s) 400, 417
MnlI CCTC 4 cut(s) 414, 433, 442, 520
MseI TTAA 3 cut(s) 200, 284, 351
MslI CAYNNNNRTG 2 cut(s) 306, 497
MspCI CTTAAG 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 58, 324
NdeII GATC 2 cut(s) 249, 478
NlaIII CATG 3 cut(s) 232, 305, 401
NmuCI GTSAC 1 cut(s) 490
NspI RCATGY 1 cut(s) 232
OliI CACNNNNGTG 1 cut(s) 497
PkrI GCNGC 2 cut(s) 60, 197
PleI GAGTC 2 cut(s) 121, 376
PmaCI CACGTG 1 cut(s) 499
PmlI CACGTG 1 cut(s) 499
PpsI GAGTC 2 cut(s) 121, 376
Ppu21I YACGTR 1 cut(s) 499
Psp6I CCWGG 1 cut(s) 61
PspCI CACGTG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 61
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 2 cut(s) 306, 497
SaqAI TTAA 3 cut(s) 200, 284, 351
SatI GCNGC 2 cut(s) 59, 196
Sau3AI GATC 2 cut(s) 249, 478
SchI GAGTC 2 cut(s) 122, 376
ScrFI CCNGG 1 cut(s) 63
SetI ASST 5 cut(s) 54, 223, 444, 456, 501
SfaNI GCATC 2 cut(s) 112, 269
SmiMI CAYNNNNRTG 2 cut(s) 306, 497
SmlI CTYRAG 4 cut(s) 22, 253, 283, 416
SmoI CTYRAG 4 cut(s) 22, 253, 283, 416
Sse9I AATT 6 cut(s) 4, 39, 77, 328, 362, 430
SsiI CCGC 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 501
TaqI TCGA 1 cut(s) 116
TasI AATT 6 cut(s) 4, 39, 77, 328, 362, 430
TauI GCSGC 1 cut(s) 198
Tru1I TTAA 3 cut(s) 200, 284, 351
Tru9I TTAA 3 cut(s) 200, 284, 351
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 2 cut(s) 17, 290
TspGWI ACGGA 1 cut(s) 198
Vha464I CTTAAG 1 cut(s) 283
XapI RAATTY 1 cut(s) 430
XceI RCATGY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.