Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

40738906 .. 40741505

Gene Structure 2600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034328

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAACTCCATAAAGCTATTAAGTTATGTGAGCAAGCTCTGCTGAATACTGATCTAACTGTTACATCCTTAGGGAGATATCAACAGGCACATGTATTCTCTTCAAAACCAGGAGGTTGTGCAGCGTTTCTCTCAAACTGCAATGCAATCTCAGCTGCAACGGTGACTTTCAATGACCGAAACTGTGAGATCCCTGCTTGTTCCATCAGCGTCCTTCCAGACTATGAAAATGTTGTATTCAACACTGCCAAAGTAAATGAAATAAATAATGGTGATACAACTCTCACAGTCATTGGTTTCTTAGATAAGTTGAACATCACTAGAGACTCCAATGATTATCTATGGTACACCACCAGTCCATCTGAATCATTTATGCGTGGTGGTAAGCATCCAATTCTCACTATGTTGTCAGCTAGGAATGCTATGCATGTCTTTGTCAATGACGAGCTCTCAGGATCAACTTATGGGACTTTGCAAGACCAGAGATTCACTTTTACAGGAGATGTAAACATGCATGCTAGGGTGAATAAAATTTTGCTTCTAAGTGTAGCTGTTGGATTACCGGGACCAGTTGTTCAACAAGGATTAGATCAAGGAAGTAGAGATTTATCAGGGCAGATATGGTCATACAAGGTTGGGCTAAACGGAGAATCCATGAATCTCGGTTCTCCAACTTCCACCTCTGCAGTGAATTGGACGAGGGTGTCTAAGGACACAGAATCAACAGCCAATGACTTGTCCAATTTTGATGCACCTGAAAGGGACGAGCCTTTGGCTTTGGACATGGGGAGCATGGGGAAGGGTGAAGTACTGATAAATGGGGGGAGCATTGGAAGATACTGGACTGTTCATGCTAATGGTTACTGCAGCGCGTGCAGTTATTTTGGTACATTTAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCGACTCAACAATGGTATGTATCATGTTCCTCGGTCTTGGCTCAAGCCATCCTAAAATCTGTTGGTGGTTTTGAGGAGCTTGCTGGCAATGTTACAAAGATTGATCTTTTGAAAGTCACCCACGTGTGGAGAAATGGCAGACCAAGAACTAAGGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

363

Amino Acids

39.45

Weight (kDa)

6.38

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHD	PF17834	29 - 85	6.2e-17	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	248 - 322	7.6e-13	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	703
AccII	CGCG	1 cut(s)	872
AclWI	GGATC	2 cut(s)	184, 463
AcsI	RAATTY	1 cut(s)	531
AcvI	CACGTG	1 cut(s)	1051
AfaI	GTAC	3 cut(s)	347, 810, 889
AfiI	CCNNNNNNNGG	1 cut(s)	1053
AflIII	ACRYGT	2 cut(s)	91, 1050
AgsI	TTSAA	6 cut(s)	105, 172, 241, 313, 578, 1039
AjnI	CCWGG	1 cut(s)	109
AleI	CACNNNNGTG	1 cut(s)	1049
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	7 cut(s)	17, 38, 155, 413, 448, 551, 1006
AluI	AGCT	7 cut(s)	17, 38, 155, 413, 448, 551, 1006
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	318, 926
AlwI	GGATC	2 cut(s)	184, 463
ApeKI	GCWGC	3 cut(s)	122, 155, 867
ApoI	RAATTY	1 cut(s)	531
AspLEI	GCGC	1 cut(s)	872
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	5 cut(s)	175, 284, 535, 815, 1036
AvaII	GGWCC	1 cut(s)	566
AxyI	CCTNAGG	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	450
BbrPI	CACGTG	1 cut(s)	1051
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	134, 142, 879
BccI	CCATC	3 cut(s)	212, 367, 983
BciT130I	CCWGG	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	318, 926
BfaI	CTAG	3 cut(s)	321, 414, 519
BfmI	CTRYAG	2 cut(s)	684, 865
BisI	GCNGC	3 cut(s)	123, 156, 868
BlsI	GCNGC	3 cut(s)	124, 157, 869
BmcAI	AGTACT	1 cut(s)	810
Bme1390I	CCNGG	2 cut(s)	111, 564
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	2 cut(s)	111, 564
BmsI	GCATC	2 cut(s)	397, 739
BpuEI	CTTGAG	1 cut(s)	954
BpuMI	CCSGG	1 cut(s)	564
BsaAI	YACGTR	1 cut(s)	1051
BsaJI	CCNNGG	1 cut(s)	957
Bsc4I	CCNNNNNNNGG	1 cut(s)	1053
Bse1I	ACTGG	3 cut(s)	354, 569, 845
Bse21I	CCTNAGG	1 cut(s)	70
Bse3DI	GCAATG	2 cut(s)	148, 1021
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	957
BseGI	GGATG	3 cut(s)	65, 388, 975
BseLI	CCNNNNNNNGG	1 cut(s)	1053
BseMI	GCAATG	2 cut(s)	148, 1021
BseMII	CTCAG	2 cut(s)	165, 465
BseNI	ACTGG	3 cut(s)	354, 569, 845
BseRI	GAGGAG	1 cut(s)	1016
BseXI	GCAGC	3 cut(s)	134, 142, 879
BsgI	GTGCAG	2 cut(s)	141, 895
Bsh1236I	CGCG	1 cut(s)	872
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	3 cut(s)	481, 579, 776
BslI	CCNNNNNNNGG	1 cut(s)	1053
BsmAI	GTCTC	2 cut(s)	318, 926
BsmFI	GGGAC	3 cut(s)	481, 579, 776
BsmI	GAATGC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	5 cut(s)	52, 189, 455, 589, 1030
BspCNI	CTCAG	2 cut(s)	164, 464
BspFNI	CGCG	1 cut(s)	872
BspLI	GGNNCC	1 cut(s)	567
BspMAI	CTGCAG	2 cut(s)	688, 869
BspPI	GGATC	2 cut(s)	184, 463
BsrDI	GCAATG	2 cut(s)	148, 1021
BsrI	ACTGG	3 cut(s)	354, 569, 845
BssECI	CCNNGG	1 cut(s)	957
BssMI	GATC	5 cut(s)	52, 189, 455, 589, 1030
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	5 cut(s)	61, 163, 185, 289, 847
Bst6I	CTCTTC	1 cut(s)	106
BstAPI	GCANNNNNTGC	2 cut(s)	40, 873
BstBAI	YACGTR	1 cut(s)	1051
BstC8I	GCNNGC	5 cut(s)	36, 516, 874, 1008, 1012
BstDEI	CTNAG	7 cut(s)	70, 151, 301, 451, 542, 708, 1077
BstF5I	GGATG	3 cut(s)	65, 388, 975
BstFNI	CGCG	1 cut(s)	872
BstHHI	GCGC	1 cut(s)	872
BstKTI	GATC	5 cut(s)	55, 192, 458, 592, 1033
BstMAI	GTCTC	2 cut(s)	318, 926
BstMBI	GATC	5 cut(s)	52, 189, 455, 589, 1030
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 152, 419, 873
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	4 cut(s)	95, 431, 514, 518
BstSCI	CCNGG	2 cut(s)	109, 562
BstSFI	CTRYAG	2 cut(s)	684, 865
BstUI	CGCG	1 cut(s)	872
BstV1I	GCAGC	3 cut(s)	134, 142, 879
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	65, 388, 975
BtsI	GCAGTG	2 cut(s)	243, 693
BtsIMutI	CAGTG	2 cut(s)	243, 693
Cac8I	GCNNGC	5 cut(s)	36, 516, 874, 1008, 1012
CfoI	GCGC	1 cut(s)	872
Cfr13I	GGNCC	1 cut(s)	566
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	3 cut(s)	346, 809, 888
CviAII	CATG	9 cut(s)	92, 428, 511, 515, 655, 784, 793, 851, 951
CviQI	GTAC	3 cut(s)	346, 809, 888
DdeI	CTNAG	7 cut(s)	70, 151, 301, 451, 542, 708, 1077
DpnI	GATC	5 cut(s)	54, 191, 457, 591, 1032
DpnII	GATC	5 cut(s)	52, 189, 455, 589, 1030
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	566
Eco53kI	GAGCTC	1 cut(s)	448
Eco72I	CACGTG	1 cut(s)	1051
Eco81I	CCTNAGG	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	80
EcoT22I	ATGCAT	2 cut(s)	429, 516
EcoT38I	GRGCYC	1 cut(s)	450
FaeI	CATG	9 cut(s)	95, 431, 514, 518, 658, 787, 796, 854, 954
FaqI	GGGAC	3 cut(s)	481, 579, 776
FatI	CATG	9 cut(s)	91, 427, 510, 514, 654, 783, 792, 850, 950
Fnu4HI	GCNGC	3 cut(s)	123, 156, 868
FokI	GGATG	3 cut(s)	52, 375, 962
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	3 cut(s)	123, 156, 868
FspBI	CTAG	3 cut(s)	321, 414, 519
GlaI	GCGC	1 cut(s)	871
GluI	GCNGC	3 cut(s)	123, 156, 868
HapII	CCGG	1 cut(s)	563
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	1 cut(s)	872
Hin1II	CATG	9 cut(s)	95, 431, 514, 518, 658, 787, 796, 854, 954
Hin6I	GCGC	1 cut(s)	870
HinP1I	GCGC	1 cut(s)	870
HinfI	GANTC	7 cut(s)	326, 365, 486, 650, 658, 719, 931
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	5 cut(s)	175, 284, 535, 815, 1036
Hpy166II	GTNNAC	2 cut(s)	348, 508
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	2 cut(s)	218, 453
Hpy8I	GTNNAC	2 cut(s)	348, 508
HpyAV	CCTTC	2 cut(s)	224, 793
HpyCH4III	ACNGT	5 cut(s)	61, 163, 185, 289, 847
HpyCH4IV	ACGT	1 cut(s)	1050
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 152, 419, 873
HpyF3I	CTNAG	7 cut(s)	70, 151, 301, 451, 542, 708, 1077
HpySE526I	ACGT	1 cut(s)	1050
Hsp92II	CATG	9 cut(s)	95, 431, 514, 518, 658, 787, 796, 854, 954
HspAI	GCGC	1 cut(s)	870
Kzo9I	GATC	5 cut(s)	52, 189, 455, 589, 1030
LmnI	GCTCC	3 cut(s)	789, 825, 1003
Lsp1109I	GCAGC	3 cut(s)	134, 142, 879
LweI	GCATC	2 cut(s)	397, 739
MaeI	CTAG	3 cut(s)	321, 414, 519
MaeII	ACGT	1 cut(s)	1050
MaeIII	GTNAC	5 cut(s)	61, 163, 860, 1018, 1042
MalI	GATC	5 cut(s)	54, 191, 457, 591, 1032
MboI	GATC	5 cut(s)	52, 189, 455, 589, 1030
MboII	GAAGA	2 cut(s)	93, 846
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	5 cut(s)	393, 531, 691, 742, 911
MlyI	GAGTC	2 cut(s)	320, 925
MmeI	TCCRAC	3 cut(s)	535, 695, 949
MnlI	CCTC	5 cut(s)	107, 691, 693, 967, 994
Mph1103I	ATGCAT	2 cut(s)	429, 516
MseI	TTAA	2 cut(s)	21, 900
MslI	CAYNNNNRTG	2 cut(s)	855, 1049
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	2 cut(s)	111, 564
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	872
MwoI	GCNNNNNNNGC	4 cut(s)	40, 152, 419, 873
NciI	CCSGG	1 cut(s)	564
NdeII	GATC	5 cut(s)	52, 189, 455, 589, 1030
NlaIII	CATG	9 cut(s)	95, 431, 514, 518, 658, 787, 796, 854, 954
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	2 cut(s)	163, 1042
NsiI	ATGCAT	2 cut(s)	429, 516
NspI	RCATGY	4 cut(s)	95, 431, 514, 518
OliI	CACNNNNGTG	1 cut(s)	1049
PaeI	GCATGC	1 cut(s)	518
PciI	ACATGT	1 cut(s)	91
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	5 cut(s)	365, 486, 650, 658, 719
PkrI	GCNGC	3 cut(s)	124, 157, 869
PleI	GAGTC	2 cut(s)	320, 925
PmaCI	CACGTG	1 cut(s)	1051
PmlI	CACGTG	1 cut(s)	1051
PpsI	GAGTC	2 cut(s)	320, 925
Ppu21I	YACGTR	1 cut(s)	1051
PscI	ACATGT	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	109
PspCI	CACGTG	1 cut(s)	1051
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	1 cut(s)	566
PstI	CTGCAG	2 cut(s)	688, 869
PsuI	RGATCY	1 cut(s)	189
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	3 cut(s)	347, 810, 889
RsaNI	GTAC	3 cut(s)	346, 809, 888
RseI	CAYNNNNRTG	2 cut(s)	855, 1049
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	21, 900
SatI	GCNGC	3 cut(s)	123, 156, 868
Sau3AI	GATC	5 cut(s)	52, 189, 455, 589, 1030
Sau96I	GGNCC	1 cut(s)	566
ScaI	AGTACT	1 cut(s)	810
SchI	GAGTC	2 cut(s)	320, 925
ScrFI	CCNGG	2 cut(s)	111, 564
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	397, 739
SfcI	CTRYAG	2 cut(s)	684, 865
SinI	GGWCC	1 cut(s)	566
SmiMI	CAYNNNNRTG	2 cut(s)	855, 1049
SmlI	CTYRAG	1 cut(s)	969
SmoI	CTYRAG	1 cut(s)	969
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	5 cut(s)	393, 531, 691, 742, 911
SspMI	CTAG	3 cut(s)	321, 414, 519
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	109, 562
TaaI	ACNGT	5 cut(s)	61, 163, 185, 289, 847
TaiI	ACGT	1 cut(s)	1053
TaqII	GACCGA	2 cut(s)	192, 949
TasI	AATT	5 cut(s)	393, 531, 691, 742, 911
TatI	WGTACW	1 cut(s)	808
TfiI	GAWTC	5 cut(s)	365, 486, 650, 658, 719
Tru1I	TTAA	2 cut(s)	21, 900
Tru9I	TTAA	2 cut(s)	21, 900
TscAI	CASTG	2 cut(s)	250, 693
TseFI	GTSAC	2 cut(s)	163, 1042
TseI	GCWGC	3 cut(s)	122, 155, 867
Tsp45I	GTSAC	2 cut(s)	163, 1042
TspDTI	ATGAA	4 cut(s)	240, 273, 671, 839
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	2 cut(s)	250, 693
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	1 cut(s)	531
XceI	RCATGY	4 cut(s)	95, 431, 514, 518
XspI	CTAG	3 cut(s)	321, 414, 519
ZrmI	AGTACT	1 cut(s)	810
Zsp2I	ATGCAT	2 cut(s)	429, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.