Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Forward (+)

4805514 .. 4810534

Gene Structure 5021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGCCCAATGATCCCAAGCAAGGCGGAGGCTTCTTCGCTTCTATAGCTTCCACTTTCAGCTCCGTCACCAAATCCGTCAACTGTGATCTAGGGATTACTGATCTAGCACACCACAGTCCTTTGACAACTGCATTGAGGAATTTCAGCGATGAGCCTCTTGAGAACGCGAGTTTCACAAAGGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTTGGAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCCTGGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGCTGCCATCTATGGTGTTGGCCGCTTAATGCTTCCGTTCCCTTCACCTAAACGCATGTGGCTTGGGTCTCTATTGATCTTGAGTGCATCACACATCATATTCAGTCTCTTAAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

144

Amino Acids

15.68

Weight (kDa)

6.96

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	170
AciI	CCGC	2 cut(s)	27, 337
AclWI	GGATC	1 cut(s)	8
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflII	CTTAAG	1 cut(s)	424
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	5 cut(s)	50, 63, 205, 268, 317
AluI	AGCT	5 cut(s)	50, 63, 205, 268, 317
Alw26I	GTCTC	2 cut(s)	387, 425
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	2 cut(s)	274, 317
ApoI	RAATTY	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	61, 351
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	286, 304
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	387, 425
BfaI	CTAG	2 cut(s)	92, 107
BfmI	CTRYAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	424
BisI	GCNGC	3 cut(s)	275, 318, 337
BlsI	GCNGC	3 cut(s)	276, 319, 338
Bme1390I	CCNGG	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	410
BpuEI	CTTGAG	3 cut(s)	182, 259, 415
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	286, 304
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	336
BshNI	GGYRCC	1 cut(s)	4
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	2 cut(s)	387, 425
BsnI	GGCC	1 cut(s)	336
Bso31I	GGTCTC	1 cut(s)	387
Bsp143I	GATC	5 cut(s)	13, 88, 103, 390, 428
BspACI	CCGC	2 cut(s)	27, 337
BspANI	GGCC	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	424
BspTNI	GGTCTC	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	5 cut(s)	13, 88, 103, 390, 428
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	86, 119
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	5 cut(s)	16, 91, 106, 393, 431
BstMAI	GTCTC	2 cut(s)	387, 425
BstMBI	GATC	5 cut(s)	13, 88, 103, 390, 428
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 274
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	286, 304
BsuRI	GGCC	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	165
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	1 cut(s)	370
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	5 cut(s)	15, 90, 105, 392, 430
DpnII	GATC	5 cut(s)	13, 88, 103, 390, 428
EaeI	YGGCCR	1 cut(s)	334
EciI	GGCGGA	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	387
Eco32I	GATATC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	277
EcoRV	GATATC	1 cut(s)	287
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	373
FaiI	YATR	5 cut(s)	47, 327, 371, 413, 433
FatI	CATG	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	275, 318, 337
Fsp4HI	GCNGC	3 cut(s)	275, 318, 337
FspBI	CTAG	2 cut(s)	92, 107
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	275, 318, 337
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HphI	GGTGA	2 cut(s)	61, 351
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188III	TCNNGA	4 cut(s)	161, 238, 311, 394
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	366
HpyCH4III	ACNGT	2 cut(s)	86, 119
HpyCH4V	TGCA	4 cut(s)	134, 230, 274, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 274
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	5 cut(s)	13, 88, 103, 390, 428
LmnI	GCTCC	2 cut(s)	68, 265
LpnPI	CCDG	3 cut(s)	261, 264, 291
Lsp1109I	GCAGC	2 cut(s)	286, 304
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	2 cut(s)	92, 107
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	5 cut(s)	15, 90, 105, 392, 430
MboI	GATC	5 cut(s)	13, 88, 103, 390, 428
MboII	GAAGA	1 cut(s)	28
MluCI	AATT	3 cut(s)	142, 255, 293
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	3 cut(s)	23, 132, 168
MseI	TTAA	2 cut(s)	341, 425
MspA1I	CMGCKG	1 cut(s)	205
MspCI	CTTAAG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	47, 274
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	5 cut(s)	13, 88, 103, 390, 428
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	373
PkrI	GCNGC	3 cut(s)	276, 319, 338
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	6
PvuII	CAGCTG	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	341, 425
SatI	GCNGC	3 cut(s)	275, 318, 337
Sau3AI	GATC	5 cut(s)	13, 88, 103, 390, 428
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	7 cut(s)	52, 65, 186, 207, 270, 319, 364
SfaNI	GCATC	1 cut(s)	410
SfcI	CTRYAG	1 cut(s)	45
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	4 cut(s)	161, 238, 394, 424
SmoI	CTYRAG	4 cut(s)	161, 238, 394, 424
Sse9I	AATT	3 cut(s)	142, 255, 293
SsiI	CCGC	2 cut(s)	27, 337
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	92, 107
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	86, 119
TasI	AATT	3 cut(s)	142, 255, 293
TauI	GCSGC	1 cut(s)	339
Tru1I	TTAA	2 cut(s)	341, 425
Tru9I	TTAA	2 cut(s)	341, 425
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	274, 317
Tsp45I	GTSAC	1 cut(s)	67
TspGWI	ACGGA	3 cut(s)	55, 67, 339
Vha464I	CTTAAG	1 cut(s)	424
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	2 cut(s)	92, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.