RLG00000001559

Galactose binding lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001191
Physical Location & Seq
Forward (+)
17496948 .. 17497602
655 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001559

Sequence Viewer

Length: 354 bp
ATGAGTATAGTTTGTATTTGGACGAGGGTGTCTATAAGGACACAGAATCAACAGCCACTGACTTGGTATAAGGCCAATTTTGATGCACCTAAAGGGGACGAGCCTTTGGCTTTGGACATGGGGAGCATGGGGAAGGGTGAAGTACAGATAACATTGGAAGATACTGGACTGTTCATGGGTAACTGCAGCGCGTGCGGTTATTTTGGTACATTCAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCGACTCAACAATGGTATCATGTTCCTCGGTCTTGGCTCAAGCCACCCCAAAATCTGTTGGTGGTATATGAGGAGGTTGCTGGCATGTTACAAAGGTTAATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

118

Amino Acids

13.35

Weight (kDa)

7.6

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BetaGal_gal-bd PF21467 20 - 100 2e-16 Beta-galactosidase, galactose-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 195
AfaI GTAC 2 cut(s) 144, 208
Alw26I GTCTC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 58
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 149
BaeI ACNNNNGTAYC 2 cut(s) 245, 278
BbvI GCAGC 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
BmsI GCATC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 74
BslFI GGGAC 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 74
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 74
BspFNI CGCG 1 cut(s) 191
BspMAI CTGCAG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 193, 328
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 191
BstMAI GTCTC 1 cut(s) 245
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 184
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 198
BstXI CCANNNNNNTGG 1 cut(s) 63
BsuRI GGCC 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 193, 328
CaiI CAGNNNCTG 1 cut(s) 58
CfoI GCGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 143, 207
CviAII CATG 5 cut(s) 118, 127, 175, 266, 331
CviJI RGCY 6 cut(s) 55, 74, 103, 110, 283, 289
CviKI_1 RGCY 6 cut(s) 55, 74, 103, 110, 283, 289
CviQI GTAC 2 cut(s) 143, 207
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
FaeI CATG 5 cut(s) 121, 130, 178, 269, 334
FaqI GGGAC 1 cut(s) 110
FatI CATG 5 cut(s) 117, 126, 174, 265, 330
Fnu4HI GCNGC 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 187
GlaI GCGC 1 cut(s) 190
GluI GCNGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 74
HhaI GCGC 1 cut(s) 191
Hin1II CATG 5 cut(s) 121, 130, 178, 269, 334
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HinfI GANTC 2 cut(s) 46, 250
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 353
Hpy188III TCNNGA 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 86, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
Hsp92II CATG 5 cut(s) 121, 130, 178, 269, 334
HspAI GCGC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 3 cut(s) 150, 199, 312
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 1 cut(s) 73
MaeIII GTNAC 2 cut(s) 179, 333
MboII GAAGA 1 cut(s) 170
MluCI AATT 2 cut(s) 76, 230
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 4 cut(s) 18, 282, 310, 313
MseI TTAA 2 cut(s) 219, 344
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 192
NlaIII CATG 5 cut(s) 121, 130, 178, 269, 334
NspI RCATGY 1 cut(s) 334
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 58
RsaI GTAC 2 cut(s) 144, 208
RsaNI GTAC 2 cut(s) 143, 207
SaqAI TTAA 2 cut(s) 219, 344
SatI GCNGC 1 cut(s) 187
SchI GAGTC 1 cut(s) 244
SetI ASST 3 cut(s) 91, 324, 344
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 76, 230
SsiI CCGC 1 cut(s) 195
SspI AATATT 1 cut(s) 348
TaaI ACNGT 1 cut(s) 171
TaqII GACCGA 1 cut(s) 264
TasI AATT 2 cut(s) 76, 230
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 2 cut(s) 219, 344
Tru9I TTAA 2 cut(s) 219, 344
TscAI CASTG 1 cut(s) 63
TseI GCWGC 1 cut(s) 186
TspDTI ATGAA 1 cut(s) 163
TspRI CASTG 1 cut(s) 63
XceI RCATGY 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.