Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

19694018 .. 19697060

Gene Structure 3043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37335

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTGTGGTACAACTCTCACAGTCATTGGTTTCTTTGATCAGTTAAACATCACTAGAGACTCCAATGATTATCTATGGTACACAACCAGTCCATCTGAATCATTTCTGCATGGTGGTAAGCATCCAATTCTCACCATGTTGTCAGCTGGGAACGCTATGCATGTCTTTGTCAATGACCAGCTCTCAGGATCAACTTATGGGACTCTGCAAGACCAGAGATTCACTTTTACAAGAGATGTAAACATGCATGCTGGTGTGAATAAAATTTTGCTTCTAAGTGTAGCTGTTGGATTACCGAACAATGGTCCTCACTTTGAGACATGGAACTTGGGAGTACTGGGACCAGTTGTTCTACAAGGATTAGATCAAGGAAGTCGAGATTTATTGGGGCAGATATGGTCATACAAGGTTGGGCTAAACGGAGAATCCATGAATCTCGGTTCTCCAACTTCCACCTCTGCAGTGAATTGGACGAGGGTGTTTATAAGGACACAGAATCAACATCCATTGACTTGGTATAAGGCCAATTTTAATGCACTTGAAGGGGACGAGCCTTTGGCTTTGGACATGGGGAGCATGGGGAAGGGTGAAGTATGGATAAATGGGGGGAACATTGGAAGATATTGGACTGTTCATGCTAATGGTAACTGCAGCGCGTGCAGTTATTTTAGTACATTCAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCAACTCAACAATGGTATCATGTTCCTCGGTCTTGGCTCAAGCCATCCCAAAATCTGTTGGTGGTATTTGAGAAGCTTGCTGGCCATTTTACAAAGATTGATCTTCTGAAAGTCACCCACGTGTTGAGAAATGGCAGAACAAGAATCGAGGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

289

Amino Acids

32.23

Weight (kDa)

8.58

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	170 - 255	2e-26	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
AccII	CGCG	1 cut(s)	656
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	793
AcsI	RAATTY	1 cut(s)	264
AcvI	CACGTG	1 cut(s)	832
AfaI	GTAC	4 cut(s)	10, 80, 336, 673
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	831
AgsI	TTSAA	1 cut(s)	542
AleI	CACNNNNGTG	1 cut(s)	830
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
AluBI	AGCT	4 cut(s)	146, 181, 284, 787
AluI	AGCT	4 cut(s)	146, 181, 284, 787
Alw26I	GTCTC	3 cut(s)	51, 311, 710
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	2 cut(s)	522, 793
ApeKI	GCWGC	1 cut(s)	651
ApoI	RAATTY	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	656
AspS9I	GGNCC	2 cut(s)	305, 341
AsuHPI	GGTGA	3 cut(s)	124, 599, 817
AvaII	GGWCC	2 cut(s)	305, 341
BaeI	ACNNNNGTAYC	2 cut(s)	710, 743
BalI	TGGCCA	1 cut(s)	795
BbrPI	CACGTG	1 cut(s)	832
BbvI	GCAGC	1 cut(s)	663
BccI	CCATC	2 cut(s)	100, 763
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	3 cut(s)	51, 311, 710
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	2 cut(s)	459, 649
BisI	GCNGC	1 cut(s)	652
BlsI	GCNGC	1 cut(s)	653
BmcAI	AGTACT	1 cut(s)	336
Bme18I	GGWCC	2 cut(s)	305, 341
BmgT120I	GGNCC	2 cut(s)	305, 341
BmiI	GGNNCC	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	734
BsaAI	YACGTR	1 cut(s)	832
BsaJI	CCNNGG	1 cut(s)	737
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	3 cut(s)	87, 342, 344
BseDI	CCNNGG	1 cut(s)	737
BseGI	GGATG	3 cut(s)	121, 502, 755
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	3 cut(s)	87, 342, 344
BseXI	GCAGC	1 cut(s)	663
BseYI	CCCAGC	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	679
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	2 cut(s)	524, 795
BslFI	GGGAC	3 cut(s)	214, 354, 560
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	3 cut(s)	51, 311, 710
BsmFI	GGGAC	3 cut(s)	214, 354, 560
BsnI	GGCC	2 cut(s)	524, 795
Bsp143I	GATC	4 cut(s)	37, 188, 364, 811
BspANI	GGCC	2 cut(s)	524, 795
BspCNI	CTCAG	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	656
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	2 cut(s)	463, 653
BspPI	GGATC	1 cut(s)	196
BsrI	ACTGG	3 cut(s)	87, 342, 344
BssECI	CCNNGG	1 cut(s)	737
BssMI	GATC	4 cut(s)	37, 188, 364, 811
Bst4CI	ACNGT	2 cut(s)	22, 631
BstAPI	GCANNNNNTGC	1 cut(s)	657
BstBAI	YACGTR	1 cut(s)	832
BstC8I	GCNNGC	4 cut(s)	249, 658, 789, 793
BstDEI	CTNAG	2 cut(s)	184, 275
BstF5I	GGATG	3 cut(s)	121, 502, 755
BstFNI	CGCG	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	656
BstKTI	GATC	4 cut(s)	40, 191, 367, 814
BstMAI	GTCTC	3 cut(s)	51, 311, 710
BstMBI	GATC	4 cut(s)	37, 188, 364, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 657
BstNSI	RCATGY	3 cut(s)	164, 247, 251
BstSFI	CTRYAG	2 cut(s)	459, 649
BstUI	CGCG	1 cut(s)	656
BstV1I	GCAGC	1 cut(s)	663
BstXI	CCANNNNNNTGG	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	524, 795
BtsCI	GGATG	3 cut(s)	121, 502, 755
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	4 cut(s)	249, 658, 789, 793
CfoI	GCGC	1 cut(s)	656
Cfr13I	GGNCC	2 cut(s)	305, 341
Csp6I	GTAC	4 cut(s)	9, 79, 335, 672
CviQI	GTAC	4 cut(s)	9, 79, 335, 672
DdeI	CTNAG	2 cut(s)	184, 275
DpnI	GATC	4 cut(s)	39, 190, 366, 813
DpnII	GATC	4 cut(s)	37, 188, 364, 811
EaeI	YGGCCR	1 cut(s)	793
Eco47I	GGWCC	2 cut(s)	305, 341
Eco72I	CACGTG	1 cut(s)	832
EcoT22I	ATGCAT	2 cut(s)	162, 249
FaqI	GGGAC	3 cut(s)	214, 354, 560
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	652
FokI	GGATG	3 cut(s)	108, 489, 742
Fsp4HI	GCNGC	1 cut(s)	652
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	1 cut(s)	655
GluI	GCNGC	1 cut(s)	652
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	524, 795
HhaI	GCGC	1 cut(s)	656
Hin6I	GCGC	1 cut(s)	654
HinP1I	GCGC	1 cut(s)	654
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	8 cut(s)	59, 98, 202, 219, 425, 433, 496, 855
HphI	GGTGA	3 cut(s)	124, 599, 817
Hpy166II	GTNNAC	2 cut(s)	81, 241
Hpy188I	TCNGA	2 cut(s)	97, 819
Hpy188III	TCNNGA	3 cut(s)	186, 377, 679
Hpy8I	GTNNAC	2 cut(s)	81, 241
HpyAV	CCTTC	2 cut(s)	536, 577
HpyCH4III	ACNGT	2 cut(s)	22, 631
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	8 cut(s)	109, 160, 208, 247, 461, 536, 651, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 657
HpyF3I	CTNAG	2 cut(s)	184, 275
HpySE526I	ACGT	1 cut(s)	831
HspAI	GCGC	1 cut(s)	654
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	37, 188, 364, 811
LmnI	GCTCC	1 cut(s)	573
Lsp1109I	GCAGC	1 cut(s)	663
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	2 cut(s)	644, 823
MalI	GATC	4 cut(s)	39, 190, 366, 813
MboI	GATC	4 cut(s)	37, 188, 364, 811
MboII	GAAGA	2 cut(s)	630, 806
MlsI	TGGCCA	1 cut(s)	795
MluCI	AATT	5 cut(s)	126, 264, 466, 526, 695
MluNI	TGGCCA	1 cut(s)	795
MlyI	GAGTC	2 cut(s)	53, 196
MmeI	TCCRAC	3 cut(s)	268, 470, 733
MnlI	CCTC	5 cut(s)	318, 466, 468, 747, 853
Mox20I	TGGCCA	1 cut(s)	795
Mph1103I	ATGCAT	2 cut(s)	162, 249
MroXI	GAANNNNTTC	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	795
MseI	TTAA	3 cut(s)	44, 531, 684
MslI	CAYNNNNRTG	3 cut(s)	252, 639, 830
Msp20I	TGGCCA	1 cut(s)	795
MspA1I	CMGCKG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	152, 657
NdeII	GATC	4 cut(s)	37, 188, 364, 811
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	823
NsiI	ATGCAT	2 cut(s)	162, 249
NspI	RCATGY	3 cut(s)	164, 247, 251
OliI	CACNNNNGTG	1 cut(s)	830
PaeI	GCATGC	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	6 cut(s)	98, 219, 425, 433, 496, 855
PkrI	GCNGC	1 cut(s)	653
PleI	GAGTC	2 cut(s)	53, 196
PmaCI	CACGTG	1 cut(s)	832
PmlI	CACGTG	1 cut(s)	832
PpsI	GAGTC	2 cut(s)	53, 196
Ppu21I	YACGTR	1 cut(s)	832
PsiI	TTATAA	1 cut(s)	485
PspCI	CACGTG	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	305, 341
PstI	CTGCAG	2 cut(s)	463, 653
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	4 cut(s)	10, 80, 336, 673
RsaNI	GTAC	4 cut(s)	9, 79, 335, 672
RseI	CAYNNNNRTG	3 cut(s)	252, 639, 830
SaqAI	TTAA	3 cut(s)	44, 531, 684
SatI	GCNGC	1 cut(s)	652
Sau3AI	GATC	4 cut(s)	37, 188, 364, 811
Sau96I	GGNCC	2 cut(s)	305, 341
ScaI	AGTACT	1 cut(s)	336
SchI	GAGTC	2 cut(s)	53, 196
SetI	ASST	7 cut(s)	148, 183, 286, 411, 458, 789, 834
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	2 cut(s)	459, 649
SinI	GGWCC	2 cut(s)	305, 341
SmiMI	CAYNNNNRTG	3 cut(s)	252, 639, 830
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
SphI	GCATGC	1 cut(s)	251
Sse9I	AATT	5 cut(s)	126, 264, 466, 526, 695
SspMI	CTAG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	22, 631
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	2 cut(s)	376, 858
TaqII	GACCGA	1 cut(s)	729
TasI	AATT	5 cut(s)	126, 264, 466, 526, 695
TatI	WGTACW	2 cut(s)	334, 671
TfiI	GAWTC	6 cut(s)	98, 219, 425, 433, 496, 855
Tru1I	TTAA	3 cut(s)	44, 531, 684
Tru9I	TTAA	3 cut(s)	44, 531, 684
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	1 cut(s)	651
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	2 cut(s)	446, 623
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	468
VpaK11BI	GGWCC	2 cut(s)	305, 341
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	3 cut(s)	164, 247, 251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	720
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	336
Zsp2I	ATGCAT	2 cut(s)	162, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.