RchiOBHm_Chr4g0416291

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001191
Physical Location & Seq
Reverse (-)
41182193 .. 41182792
600 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38645

Sequence Viewer

Length: 402 bp
ATGCTCAAATCCTACCTGTGCATATTCAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCTTGGAGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGAAAGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAACACTGTCTCATCCCTTGGAGGCATCTGCTCATATGGACCAGTTTCTCTTCTCTCTGGTCTTAACCCTCGTCCATTACACTTGTTTCTCCATTTCTTTGCAGCTGCCATCTATGGTGTTGGCCGCTTAATGCTTCCTTTCCCTTCACCTAAACGCATGTGGCTTGGGTTTCTATTGATCTTGGCATGTCAGAGAAATTATTTACACTTCTTTCTTGTGTTCACGTTTGTCAATTATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

133

Amino Acids

15.09

Weight (kDa)

8.75

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SE PF08491 58 - 107 4e-12 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 283
AcoI YGGCCR 1 cut(s) 280
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 3 cut(s) 70, 79, 263
AluI AGCT 3 cut(s) 70, 79, 263
Alw26I GTCTC 1 cut(s) 172
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 3 cut(s) 76, 260, 263
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 297
AvaII GGWCC 1 cut(s) 197
BbvI GCAGC 3 cut(s) 88, 250, 272
BccI CCATC 2 cut(s) 141, 275
BciVI GTATCC 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 172
BfuI GTATCC 1 cut(s) 149
BisI GCNGC 4 cut(s) 77, 261, 264, 283
BlsI GCNGC 4 cut(s) 78, 262, 265, 284
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 75, 107
BpuEI CTTGAG 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 200
BseXI GCAGC 3 cut(s) 88, 250, 272
BshFI GGCC 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 336
BspACI CCGC 1 cut(s) 283
BspANI GGCC 1 cut(s) 282
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 213
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 1 cut(s) 339
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 336
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNSI RCATGY 2 cut(s) 319, 348
BstV1I GCAGC 3 cut(s) 88, 250, 272
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 282
BtsCI GGATG 1 cut(s) 170
BtsIMutI CAGTG 2 cut(s) 34, 162
Cfr13I GGNCC 1 cut(s) 197
CviAII CATG 2 cut(s) 316, 345
CviJI RGCY 6 cut(s) 49, 70, 79, 263, 282, 322
CviKI_1 RGCY 6 cut(s) 49, 70, 79, 263, 282, 322
DpnI GATC 1 cut(s) 338
DpnII GATC 1 cut(s) 336
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 175
Eco32I GATATC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 197
EcoRV GATATC 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 2 cut(s) 319, 348
FaiI YATR 9 cut(s) 23, 133, 193, 195, 273, 317, 346, 396, 400
FatI CATG 2 cut(s) 315, 344
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 4 cut(s) 77, 261, 264, 283
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 4 cut(s) 77, 261, 264, 283
GluI GCNGC 4 cut(s) 77, 261, 264, 283
HaeIII GGCC 1 cut(s) 282
Hin1II CATG 2 cut(s) 319, 348
HphI GGTGA 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 2 cut(s) 40, 113
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 146, 312
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 4 cut(s) 21, 32, 76, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 2 cut(s) 319, 348
Kzo9I GATC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 4 cut(s) 29, 63, 201, 213
Lsp1109I GCAGC 3 cut(s) 88, 250, 272
LweI GCATC 1 cut(s) 192
MaeII ACGT 1 cut(s) 383
MalI GATC 1 cut(s) 338
MboI GATC 1 cut(s) 336
MboII GAAGA 2 cut(s) 128, 200
MluCI AATT 4 cut(s) 57, 95, 355, 391
MnlI CCTC 3 cut(s) 77, 173, 237
MseI TTAA 2 cut(s) 222, 287
MspA1I CMGCKG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 336
NlaIII CATG 2 cut(s) 319, 348
NspI RCATGY 2 cut(s) 319, 348
PkrI GCNGC 4 cut(s) 78, 262, 265, 284
PspPI GGNCC 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 263
SaqAI TTAA 2 cut(s) 222, 287
SatI GCNGC 4 cut(s) 77, 261, 264, 283
Sau3AI GATC 1 cut(s) 336
Sau96I GGNCC 1 cut(s) 197
SetI ASST 6 cut(s) 18, 72, 81, 265, 310, 386
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 4 cut(s) 57, 95, 355, 391
SsiI CCGC 1 cut(s) 283
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 386
TasI AATT 4 cut(s) 57, 95, 355, 391
TauI GCSGC 1 cut(s) 285
Tru1I TTAA 2 cut(s) 222, 287
Tru9I TTAA 2 cut(s) 222, 287
TscAI CASTG 2 cut(s) 34, 169
TseI GCWGC 3 cut(s) 76, 260, 263
TspRI CASTG 2 cut(s) 34, 169
VpaK11BI GGWCC 1 cut(s) 197
XceI RCATGY 2 cut(s) 319, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.