Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Forward (+)

21522365 .. 21526169

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCTACGCTTGCCGGTGAGTCACTTCCTGTGACCAAAGGCCCTGGAGAGATTGAAGCTGTGGTGATTGCCACTAGTGTTCATACCTTTTTCGGCAAGGCTGCTCATCTTGTCGATAACACAAATCAACAGGGCCACTTTCAAAAGCTTGATGCTTGGAATTGCAGTGCTAGTGGGATTCTAGGAGAGAATATGGGTGTTATTATACAATTCCTCTTGATCATGGTCAATCTGGGAGGACAGATAGCCTCTTGTATATCCTTCATGGACTCTGCCTATGCTTCGATGACTATTGGTTTTGAAAGTCTCCTTTTCAGTAGTTCATCTCTTATTTGGGATTATACGGATCTGGGTTTGAGTTTGAAGGCTAGGAGGGATTCGACAGATATTGAAATATATGGGATGCAAGAAATCCCACATGATGTCTTGGCTGCACATTATGGAGAGGAAGTTAAAGGATCCTTACCAGTGAAGACAATGCCCCGTCAAAAATGGCTAAGTGGAAATCCCATCAACTCAGCTTGTTGGCGGTGTGGTGCCAGGTTCACTAGGGACATATCCTCCCCAACCACCTTTTGTAATGCTGCCAATTACCATGGAAGAGAACTAGTTTCGGAAGAACTGCTGGAGGCCTTTCTATTATTACTCAATGGTCCTCACTTTGAGACATGGAACTTGGGAGTACTGGGACCAGTTGTTCTACAAGGATTAGATCAAGGAATTAGAGATTTATCAGGGCAGATATGGTCATACAAGGCCAATTTTGATGCACCTGAAGGGGACGAACCTTTGGCTTTAGACATGGGGAGCATGGGGAAGGGTGAAGTACAGATAGCATTGGAAGATACTGGACTGTTCATGCTAATGGTAACTGCAGCACTGCAGTTATTTTGGTCTTGGCTCAAGCCATCCCAAAATCTGTTAGTGGTATTTGAGGAGCTTGCTGGCGATGTTACAAAGATTGATCTTCTGAAAGTCACCCACGTGTTGAGATATGGCAGACCAAGAACCGAGGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

341

Amino Acids

37.25

Weight (kDa)

4.9

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	3 cut(s)	354, 453, 466
AcuI	CTGAAG	1 cut(s)	795
AcvI	CACGTG	1 cut(s)	985
AfaI	GTAC	2 cut(s)	684, 828
AflIII	ACRYGT	1 cut(s)	984
AgsI	TTSAA	5 cut(s)	56, 143, 302, 364, 392
AhlI	ACTAGT	2 cut(s)	74, 607
AjnI	CCWGG	2 cut(s)	43, 539
AleI	CACNNNNGTG	1 cut(s)	983
AloI	GAACNNNNNNTCC	2 cut(s)	681, 713
AluBI	AGCT	4 cut(s)	59, 148, 521, 940
AluI	AGCT	4 cut(s)	59, 148, 521, 940
Alw26I	GTCTC	2 cut(s)	311, 659
AlwI	GGATC	3 cut(s)	354, 453, 466
AoxI	GGCC	4 cut(s)	40, 133, 630, 756
ApeKI	GCWGC	4 cut(s)	101, 431, 584, 875
AspS9I	GGNCC	4 cut(s)	41, 133, 653, 689
AsuHPI	GGTGA	4 cut(s)	29, 76, 833, 970
AvaII	GGWCC	2 cut(s)	653, 689
BamHI	GGATCC	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	536
BbrPI	CACGTG	1 cut(s)	985
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	4 cut(s)	88, 418, 571, 887
BccI	CCATC	2 cut(s)	518, 916
BciT130I	CCWGG	2 cut(s)	45, 541
BclI	TGATCA	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	311, 659
BcuI	ACTAGT	2 cut(s)	74, 607
BfaI	CTAG	6 cut(s)	75, 171, 182, 369, 549, 608
BfmI	CTRYAG	2 cut(s)	873, 881
BisI	GCNGC	4 cut(s)	102, 432, 585, 876
BlsI	GCNGC	4 cut(s)	103, 433, 586, 877
BmcAI	AGTACT	1 cut(s)	684
Bme1390I	CCNGG	2 cut(s)	45, 541
Bme18I	GGWCC	2 cut(s)	653, 689
BmgT120I	GGNCC	4 cut(s)	41, 133, 653, 689
BmiI	GGNNCC	3 cut(s)	460, 538, 690
BmrFI	CCNGG	2 cut(s)	45, 541
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	3 cut(s)	142, 393, 757
BmuI	ACTGGG	1 cut(s)	695
BpiI	GAAGAC	1 cut(s)	479
BpmI	CTGGAG	2 cut(s)	66, 647
BpuEI	CTTGAG	1 cut(s)	887
BsaAI	YACGTR	1 cut(s)	985
BsaJI	CCNNGG	3 cut(s)	43, 595, 1011
BsaXI	ACNNNNNCTCC	4 cut(s)	435, 465, 545, 575
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	4 cut(s)	467, 690, 692, 853
BseBI	CCWGG	2 cut(s)	45, 541
BseDI	CCNNGG	3 cut(s)	43, 595, 1011
BseGI	GGATG	2 cut(s)	408, 908
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	4 cut(s)	467, 690, 692, 853
BseRI	GAGGAG	1 cut(s)	950
BseXI	GCAGC	4 cut(s)	88, 418, 571, 887
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	4 cut(s)	42, 135, 632, 758
BshNI	GGYRCC	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	3 cut(s)	566, 702, 794
BsmAI	GTCTC	2 cut(s)	311, 659
BsmFI	GGGAC	3 cut(s)	566, 702, 794
BsnI	GGCC	4 cut(s)	42, 135, 632, 758
Bsp143I	GATC	5 cut(s)	219, 346, 458, 712, 964
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	4 cut(s)	42, 135, 632, 758
BspCNI	CTCAG	1 cut(s)	530
BspLI	GGNNCC	3 cut(s)	460, 538, 690
BspMAI	CTGCAG	2 cut(s)	877, 885
BspPI	GGATC	3 cut(s)	354, 453, 466
BspT107I	GGYRCC	1 cut(s)	536
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	4 cut(s)	467, 690, 692, 853
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	43, 595, 1011
BssMI	GATC	5 cut(s)	219, 346, 458, 712, 964
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	45, 541
Bst4CI	ACNGT	1 cut(s)	855
Bst6I	CTCTTC	1 cut(s)	595
BstBAI	YACGTR	1 cut(s)	985
BstC8I	GCNNGC	3 cut(s)	12, 942, 946
BstDEI	CTNAG	2 cut(s)	497, 517
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	2 cut(s)	408, 908
BstKTI	GATC	5 cut(s)	222, 349, 461, 715, 967
BstMAI	GTCTC	2 cut(s)	311, 659
BstMBI	GATC	5 cut(s)	219, 346, 458, 712, 964
BstNI	CCWGG	2 cut(s)	45, 541
BstSCI	CCNGG	2 cut(s)	43, 539
BstSFI	CTRYAG	2 cut(s)	873, 881
BstV1I	GCAGC	4 cut(s)	88, 418, 571, 887
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	2 cut(s)	346, 458
BstYI	RGATCY	2 cut(s)	346, 458
BsuRI	GGCC	4 cut(s)	42, 135, 632, 758
BtgI	CCRYGG	1 cut(s)	595
BtgZI	GCGATG	1 cut(s)	963
BtsCI	GGATG	2 cut(s)	408, 908
BtsI	GCAGTG	2 cut(s)	172, 878
BtsIMutI	CAGTG	3 cut(s)	172, 474, 878
Cac8I	GCNNGC	3 cut(s)	12, 942, 946
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	4 cut(s)	41, 133, 653, 689
Csp6I	GTAC	2 cut(s)	683, 827
CviAII	CATG	8 cut(s)	223, 265, 419, 596, 669, 802, 811, 859
CviQI	GTAC	2 cut(s)	683, 827
DdeI	CTNAG	2 cut(s)	497, 517
DpnI	GATC	5 cut(s)	221, 348, 460, 714, 966
DpnII	GATC	5 cut(s)	219, 346, 458, 712, 964
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	595
Eco147I	AGGCCT	1 cut(s)	632
Eco47I	GGWCC	2 cut(s)	653, 689
Eco57I	CTGAAG	1 cut(s)	795
Eco72I	CACGTG	1 cut(s)	985
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	43, 539
EcoT14I	CCWWGG	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	8 cut(s)	226, 268, 422, 599, 672, 805, 814, 862
FaqI	GGGAC	3 cut(s)	566, 702, 794
FatI	CATG	8 cut(s)	222, 264, 418, 595, 668, 801, 810, 858
FbaI	TGATCA	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	102, 432, 585, 876
FokI	GGATG	2 cut(s)	415, 895
Fsp4HI	GCNGC	4 cut(s)	102, 432, 585, 876
FspBI	CTAG	6 cut(s)	75, 171, 182, 369, 549, 608
GluI	GCNGC	4 cut(s)	102, 432, 585, 876
GsuI	CTGGAG	2 cut(s)	66, 647
HaeIII	GGCC	4 cut(s)	42, 135, 632, 758
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	8 cut(s)	226, 268, 422, 599, 672, 805, 814, 862
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	4 cut(s)	20, 178, 269, 377
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	4 cut(s)	29, 76, 833, 970
Hpy166II	GTNNAC	2 cut(s)	6, 546
Hpy188I	TCNGA	2 cut(s)	616, 972
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	2 cut(s)	6, 546
HpyAV	CCTTC	4 cut(s)	271, 358, 770, 811
HpyCH4III	ACNGT	1 cut(s)	855
HpyCH4IV	ACGT	1 cut(s)	984
HpyCH4V	TGCA	6 cut(s)	165, 406, 434, 770, 875, 883
HpyF3I	CTNAG	2 cut(s)	497, 517
HpySE526I	ACGT	1 cut(s)	984
Hsp92II	CATG	8 cut(s)	226, 268, 422, 599, 672, 805, 814, 862
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	5 cut(s)	219, 346, 458, 712, 964
LmnI	GCTCC	2 cut(s)	807, 937
Lsp1109I	GCAGC	4 cut(s)	88, 418, 571, 887
LweI	GCATC	3 cut(s)	142, 393, 757
MaeI	CTAG	6 cut(s)	75, 171, 182, 369, 549, 608
MaeII	ACGT	1 cut(s)	984
MaeIII	GTNAC	5 cut(s)	21, 31, 868, 952, 976
MalI	GATC	5 cut(s)	221, 348, 460, 714, 966
MboI	GATC	5 cut(s)	219, 346, 458, 712, 964
MboII	GAAGA	5 cut(s)	484, 612, 629, 854, 959
MflI	RGATCY	2 cut(s)	346, 458
MluCI	AATT	5 cut(s)	160, 209, 589, 720, 760
MlyI	GAGTC	2 cut(s)	29, 263
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	2 cut(s)	863, 983
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	45, 541
MvaI	CCWGG	2 cut(s)	45, 541
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	5 cut(s)	219, 346, 458, 712, 964
NlaIII	CATG	8 cut(s)	226, 268, 422, 599, 672, 805, 814, 862
NlaIV	GGNNCC	3 cut(s)	460, 538, 690
NmuCI	GTSAC	3 cut(s)	21, 31, 976
OliI	CACNNNNGTG	1 cut(s)	983
PceI	AGGCCT	1 cut(s)	632
PfeI	GAWTC	2 cut(s)	178, 377
PkrI	GCNGC	4 cut(s)	103, 433, 586, 877
PleI	GAGTC	2 cut(s)	28, 263
PmaCI	CACGTG	1 cut(s)	985
PmlI	CACGTG	1 cut(s)	985
PpsI	GAGTC	2 cut(s)	28, 263
Ppu21I	YACGTR	1 cut(s)	985
Psp6I	CCWGG	2 cut(s)	43, 539
PspCI	CACGTG	1 cut(s)	985
PspGI	CCWGG	2 cut(s)	43, 539
PspN4I	GGNNCC	3 cut(s)	460, 538, 690
PspPI	GGNCC	4 cut(s)	41, 133, 653, 689
PstI	CTGCAG	2 cut(s)	877, 885
PsuI	RGATCY	2 cut(s)	346, 458
RsaI	GTAC	2 cut(s)	684, 828
RsaNI	GTAC	2 cut(s)	683, 827
RseI	CAYNNNNRTG	2 cut(s)	863, 983
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	4 cut(s)	102, 432, 585, 876
Sau3AI	GATC	5 cut(s)	219, 346, 458, 712, 964
Sau96I	GGNCC	4 cut(s)	41, 133, 653, 689
ScaI	AGTACT	1 cut(s)	684
SchI	GAGTC	2 cut(s)	29, 263
ScrFI	CCNGG	2 cut(s)	45, 541
SfaNI	GCATC	3 cut(s)	142, 393, 757
SfcI	CTRYAG	2 cut(s)	873, 881
SinI	GGWCC	2 cut(s)	653, 689
SmiMI	CAYNNNNRTG	2 cut(s)	863, 983
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
SpeI	ACTAGT	2 cut(s)	74, 607
Sse9I	AATT	5 cut(s)	160, 209, 589, 720, 760
SseBI	AGGCCT	1 cut(s)	632
SsiI	CCGC	1 cut(s)	529
SspMI	CTAG	6 cut(s)	75, 171, 182, 369, 549, 608
StuI	AGGCCT	1 cut(s)	632
StyD4I	CCNGG	2 cut(s)	43, 539
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	1 cut(s)	855
TaiI	ACGT	1 cut(s)	987
TaqI	TCGA	3 cut(s)	114, 284, 380
TasI	AATT	5 cut(s)	160, 209, 589, 720, 760
TatI	WGTACW	2 cut(s)	682, 826
TfiI	GAWTC	2 cut(s)	178, 377
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	3 cut(s)	172, 474, 885
TseFI	GTSAC	3 cut(s)	21, 31, 976
TseI	GCWGC	4 cut(s)	101, 431, 584, 875
Tsp45I	GTSAC	3 cut(s)	21, 31, 976
TspDTI	ATGAA	4 cut(s)	71, 253, 312, 847
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	3 cut(s)	172, 474, 885
VpaK11BI	GGWCC	2 cut(s)	653, 689
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	6 cut(s)	75, 171, 182, 369, 549, 608
ZrmI	AGTACT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.