Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Forward (+)

82930829 .. 82933076

Gene Structure 2248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG585400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAATTTCTGGAGAGCTTCCTACAATTTCAGAACAGGTGGTGTGATTTCCCTCATCCTGGATCCAAGGACATGTGGCAGGGGTCATTATAGGGGAATTAGAACTAAGCCGATGTGTTTTTATGGTATTGTATCAAATGATAGTGAACCTGATATAATTGATGGTGAGGGTGCTGAAACAGGACATGTAATACGCACAACTGTTGGCGGTCGAGGTGGTCAATCTAGACAGACAGTGAGTTATATTTCAGAACATGTGGTTGGAACTGGCTCTTTTGGGGTTGTTTTCCAGGTTGGTTCTCCGATCCAAGACAAGCGTTACAAGAACCGGGAGTTACAGATTATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACAATGCTTCTTTTCAACTACAGACAAAGAAGAGGTTTACTTGAATCTCGTACTTGAATTTGTTCCTGAAACTGTTTACCGTATCCCAAGGAACTATAGCAGGATCAACCAGTGGATGCCTTTAATATATGTTAAACTTTATACCTACCAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCATGACATCAAGCCTCAAAATTTACTTGTAAGATTATTTTTCCATATGGATGGTTGCTTTTGTATGACTCTGGATATCCTGTCTGATATCGATTCACTGGGTTCCTTAGCAGAGCCATTGGACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

235

Amino Acids

26.78

Weight (kDa)

7.07

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	108 - 203	3e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	5 cut(s)	56, 69, 298, 363, 491
AcsI	RAATTY	3 cut(s)	4, 437, 598
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	3 cut(s)	71, 184, 253
AgsI	TTSAA	3 cut(s)	396, 424, 437
AjnI	CCWGG	2 cut(s)	57, 288
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AlwI	GGATC	5 cut(s)	56, 69, 298, 363, 491
ApoI	RAATTY	3 cut(s)	4, 437, 598
Asp700I	GAANNNNTTC	1 cut(s)	441
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	176, 569
BaeGI	GKGCMC	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	61
BccI	CCATC	2 cut(s)	155, 623
BciT130I	CCWGG	2 cut(s)	59, 290
BciVI	GTATCC	1 cut(s)	473
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	2 cut(s)	399, 475
BfuI	GTATCC	1 cut(s)	473
BglII	AGATCT	1 cut(s)	531
Bme1390I	CCNGG	3 cut(s)	59, 290, 329
BmiI	GGNNCC	2 cut(s)	63, 682
BmrFI	CCNGG	3 cut(s)	59, 290, 329
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	2 cut(s)	486, 579
BmuI	ACTGGG	1 cut(s)	686
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	685
BpuMI	CCSGG	1 cut(s)	329
Bsa29I	ATCGAT	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	65, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	3 cut(s)	271, 490, 681
BseBI	CCWGG	2 cut(s)	59, 290
BseCI	ATCGAT	1 cut(s)	669
BseDI	CCNNGG	2 cut(s)	65, 467
BseGI	GGATG	3 cut(s)	54, 501, 634
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseNI	ACTGG	3 cut(s)	271, 490, 681
BseSI	GKGCMC	1 cut(s)	544
Bsh1285I	CGRYCG	1 cut(s)	211
BshVI	ATCGAT	1 cut(s)	669
BsiEI	CGRYCG	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	5 cut(s)	61, 303, 355, 483, 531
BspACI	CCGC	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	63, 682
BspPI	GGATC	5 cut(s)	56, 69, 298, 363, 491
BsrI	ACTGG	3 cut(s)	271, 490, 681
BssECI	CCNNGG	2 cut(s)	65, 467
BssMI	GATC	5 cut(s)	61, 303, 355, 483, 531
BssT1I	CCWWGG	2 cut(s)	65, 467
Bst2UI	CCWGG	2 cut(s)	59, 290
Bst4CI	ACNGT	4 cut(s)	202, 235, 454, 461
Bst6I	CTCTTC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	105, 685
BstF5I	GGATG	3 cut(s)	54, 501, 634
BstKTI	GATC	5 cut(s)	64, 306, 358, 486, 534
BstMBI	GATC	5 cut(s)	61, 303, 355, 483, 531
BstMCI	CGRYCG	1 cut(s)	211
BstNI	CCWGG	2 cut(s)	59, 290
BstNSI	RCATGY	3 cut(s)	75, 188, 257
BstSCI	CCNGG	3 cut(s)	57, 288, 327
BstSFI	CTRYAG	2 cut(s)	399, 475
BstSLI	GKGCMC	1 cut(s)	544
BstX2I	RGATCY	2 cut(s)	61, 531
BstXI	CCANNNNNNTGG	1 cut(s)	629
BstYI	RGATCY	2 cut(s)	61, 531
Bsu15I	ATCGAT	1 cut(s)	669
BsuI	GTATCC	1 cut(s)	473
BsuTUI	ATCGAT	1 cut(s)	669
BtsCI	GGATG	3 cut(s)	54, 501, 634
BtsIMutI	CAGTG	3 cut(s)	240, 497, 674
ClaI	ATCGAT	1 cut(s)	669
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	5 cut(s)	72, 185, 254, 581, 705
CviJI	RGCY	5 cut(s)	17, 109, 270, 592, 694
CviKI_1	RGCY	5 cut(s)	17, 109, 270, 592, 694
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	2 cut(s)	105, 685
DpnI	GATC	5 cut(s)	63, 305, 357, 485, 533
DpnII	GATC	5 cut(s)	61, 303, 355, 483, 531
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	65, 467
Eco32I	GATATC	2 cut(s)	655, 667
EcoRII	CCWGG	2 cut(s)	57, 288
EcoRV	GATATC	2 cut(s)	655, 667
EcoT14I	CCWWGG	2 cut(s)	65, 467
ErhI	CCWWGG	2 cut(s)	65, 467
FaeI	CATG	5 cut(s)	75, 188, 257, 584, 708
FatI	CATG	5 cut(s)	71, 184, 253, 580, 704
FauNDI	CATATG	1 cut(s)	624
FokI	GGATG	3 cut(s)	41, 508, 641
FspBI	CTAG	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	31
HapII	CCGG	1 cut(s)	328
Hin1II	CATG	5 cut(s)	75, 188, 257, 584, 708
HinfI	GANTC	3 cut(s)	424, 646, 671
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	2 cut(s)	176, 569
Hpy166II	GTNNAC	3 cut(s)	146, 418, 457
Hpy188I	TCNGA	4 cut(s)	32, 250, 303, 664
Hpy188III	TCNNGA	4 cut(s)	10, 225, 446, 650
Hpy8I	GTNNAC	3 cut(s)	146, 418, 457
HpyCH4III	ACNGT	4 cut(s)	202, 235, 454, 461
HpyCH4V	TGCA	1 cut(s)	346
HpyF3I	CTNAG	2 cut(s)	105, 685
Hsp92II	CATG	5 cut(s)	75, 188, 257, 584, 708
Kzo9I	GATC	5 cut(s)	61, 303, 355, 483, 531
LweI	GCATC	2 cut(s)	486, 579
MaeI	CTAG	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	317, 333, 575
MalI	GATC	5 cut(s)	63, 305, 357, 485, 533
MboI	GATC	5 cut(s)	61, 303, 355, 483, 531
MboII	GAAGA	1 cut(s)	422
MflI	RGATCY	2 cut(s)	61, 531
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	6 cut(s)	4, 25, 96, 156, 437, 598
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	2 cut(s)	241, 333
MnlI	CCTC	5 cut(s)	62, 160, 206, 406, 603
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	2 cut(s)	503, 513
MslI	CAYNNNNRTG	1 cut(s)	627
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	3 cut(s)	59, 290, 329
MvaI	CCWGG	2 cut(s)	59, 290
NciI	CCSGG	1 cut(s)	329
NdeI	CATATG	1 cut(s)	624
NdeII	GATC	5 cut(s)	61, 303, 355, 483, 531
NlaIII	CATG	5 cut(s)	75, 188, 257, 584, 708
NlaIV	GGNNCC	2 cut(s)	63, 682
NmuCI	GTSAC	1 cut(s)	575
NspI	RCATGY	3 cut(s)	75, 188, 257
PciI	ACATGT	3 cut(s)	71, 184, 253
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	424, 671
PfoI	TCCNGGA	1 cut(s)	57
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
PscI	ACATGT	3 cut(s)	71, 184, 253
Psp6I	CCWGG	2 cut(s)	57, 288
PspGI	CCWGG	2 cut(s)	57, 288
PspN4I	GGNNCC	2 cut(s)	63, 682
PsuI	RGATCY	2 cut(s)	61, 531
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	503, 513
Sau3AI	GATC	5 cut(s)	61, 303, 355, 483, 531
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	3 cut(s)	59, 290, 329
SduI	GDGCHC	1 cut(s)	544
SetI	ASST	7 cut(s)	19, 40, 151, 217, 294, 417, 527
SfaNI	GCATC	2 cut(s)	486, 579
SfcI	CTRYAG	2 cut(s)	399, 475
SmiMI	CAYNNNNRTG	1 cut(s)	627
Sse9I	AATT	6 cut(s)	4, 25, 96, 156, 437, 598
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	3 cut(s)	57, 288, 327
StyI	CCWWGG	2 cut(s)	65, 467
TaaI	ACNGT	4 cut(s)	202, 235, 454, 461
TaqI	TCGA	2 cut(s)	211, 669
TasI	AATT	6 cut(s)	4, 25, 96, 156, 437, 598
TfiI	GAWTC	2 cut(s)	424, 671
Tru1I	TTAA	2 cut(s)	503, 513
Tru9I	TTAA	2 cut(s)	503, 513
TscAI	CASTG	3 cut(s)	240, 497, 681
TseFI	GTSAC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	240, 497, 681
XapI	RAATTY	3 cut(s)	4, 437, 598
XbaI	TCTAGA	1 cut(s)	224
XceI	RCATGY	3 cut(s)	75, 188, 257
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.