Rmu_sc0004679.1_g000008

Galactose binding lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004679.1
OG0001191
Physical Location & Seq
Forward (+)
68133 .. 72232
4100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004679.1_g000008.1.cds

Sequence Viewer

Length: 408 bp
atggagaatcaccggagacccaaaacagcggctgcactatattctccaccttgctacgacttctacggctcaaatcgagccaccaaactcaccaatcttgaagaggaagaagagagggttcgaatgacacaggtggcgcctaaatctgtcaccggacataggagatatcaccagaagaagatgactggttattttggtacattcaagattaacaagtgccaatttggttgtctccaaccgactcaacaatggtatcatgttcctcagtcttggctcaagccatcccaaaatctgttggtggtatttgaggagcttgctggcgatgttacaaagattgatcttctgaaagtcacccacgtgttgagaaatggcttaccaaggcaaactgaaggagcaaaagaagcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

135

Amino Acids

15.61

Weight (kDa)

9.45

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 136
AciI CCGC 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 408
AcvI CACGTG 1 cut(s) 358
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 159
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 2 cut(s) 101, 205
AleI CACNNNNGTG 1 cut(s) 356
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 2 cut(s) 10, 236
AlwNI CAGNNNCTG 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 139
AsuHPI GGTGA 4 cut(s) 82, 142, 161, 343
AsuII TTCGAA 1 cut(s) 121
BaeI ACNNNNGTAYC 2 cut(s) 236, 269
BanI GGYRCC 1 cut(s) 136
BbrPI CACGTG 1 cut(s) 358
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 82
BcoDI GTCTC 2 cut(s) 10, 236
BfoI RGCGCY 1 cut(s) 140
BisI GCNGC 2 cut(s) 30, 33
BlsI GCNGC 2 cut(s) 31, 34
BmiI GGNNCC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 260
BsaAI YACGTR 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 377
BsaWI WCCGGW 2 cut(s) 12, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 136
BsiSI CCGG 2 cut(s) 13, 153
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 2 cut(s) 10, 236
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 121
Bsp143I GATC 1 cut(s) 337
BspACI CCGC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 1 cut(s) 337
BssNI GRCGYC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 96, 105
BstACI GRCGYC 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 358
BstBI TTCGAA 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 315, 319
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 2 cut(s) 10, 236
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstV1I GCAGC 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 315, 319
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 198
CviAII CATG 1 cut(s) 257
CviJI RGCY 8 cut(s) 32, 69, 80, 274, 280, 313, 372, 404
CviKI_1 RGCY 8 cut(s) 32, 69, 80, 274, 280, 313, 372, 404
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 264
DinI GGCGCC 1 cut(s) 138
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
Eam1104I CTCTTC 2 cut(s) 96, 105
EarI CTCTTC 2 cut(s) 96, 105
Eco130I CCWWGG 1 cut(s) 377
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 408
Eco72I CACGTG 1 cut(s) 358
EcoRV GATATC 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 377
EgeI GGCGCC 1 cut(s) 138
EheI GGCGCC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 1 cut(s) 260
FaiI YATR 3 cut(s) 40, 159, 258
FatI CATG 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 30, 33
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 2 cut(s) 30, 33
GlaI GCGC 1 cut(s) 138
GluI GCNGC 2 cut(s) 30, 33
HaeII RGCGCY 1 cut(s) 140
HapII CCGG 2 cut(s) 13, 153
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 2 cut(s) 7, 241
HpaII CCGG 2 cut(s) 13, 153
HphI GGTGA 4 cut(s) 82, 142, 161, 343
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 98, 205
HpyAV CCTTC 1 cut(s) 383
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 357
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 1 cut(s) 137
KasI GGCGCC 1 cut(s) 136
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 2 cut(s) 310, 392
LpnPI CCDG 6 cut(s) 26, 116, 166, 171, 185, 303
Lsp1109I GCAGC 1 cut(s) 19
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 3 cut(s) 148, 325, 349
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 6 cut(s) 113, 119, 122, 187, 190, 332
MluCI AATT 1 cut(s) 221
Mly113I GGCGCC 1 cut(s) 137
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 4 cut(s) 97, 108, 273, 301
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 2 cut(s) 13, 153
MwoI GCNNNNNNNGC 1 cut(s) 401
NarI GGCGCC 1 cut(s) 137
NdeII GATC 1 cut(s) 337
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 2 cut(s) 148, 349
NspV TTCGAA 1 cut(s) 121
OliI CACNNNNGTG 1 cut(s) 356
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 31, 34
PleI GAGTC 1 cut(s) 235
PluTI GGCGCC 1 cut(s) 140
PmaCI CACGTG 1 cut(s) 358
PmlI CACGTG 1 cut(s) 358
PpsI GAGTC 1 cut(s) 235
Ppu21I YACGTR 1 cut(s) 358
PspCI CACGTG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 30, 33
Sau3AI GATC 1 cut(s) 337
SchI GAGTC 1 cut(s) 235
SetI ASST 4 cut(s) 52, 135, 315, 360
SfoI GGCGCC 1 cut(s) 138
SfuI TTCGAA 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 1 cut(s) 221
SsiI CCGC 1 cut(s) 29
SspDI GGCGCC 1 cut(s) 136
StyI CCWWGG 1 cut(s) 377
TaiI ACGT 1 cut(s) 360
TaqI TCGA 2 cut(s) 76, 121
TasI AATT 1 cut(s) 221
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseFI GTSAC 2 cut(s) 148, 349
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 2 cut(s) 148, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.