Rroxscaffold_1G00003720

Galactose binding lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001191
Physical Location & Seq
Forward (+)
4809380 .. 4810534
1155 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00003720.1

Sequence Viewer

Length: 276 bp
ATGGTAACTGGATTGTTCATTGGAAGATACTGGACTGTTCATGCTAATGGTAACTGTAGCGCGTGCAATTATTTTGGTACATTCAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCGACTCAACAATGGTATCATGTTCCTCGGTATTGGCTCAAGCCATCCCAAAATTTGTTGGTGGTATTTGAGGAGCTTGCTGGCGATGTTACAAAGATTGATCTTCTGAAAGTCACCCGCGTGTTGAGAGATGGCAGACCAAGAACCGAGGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

91

Amino Acids

10.55

Weight (kDa)

9.3

Isoelectric Point (pI)

25.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BetaGal_gal-bd PF21467 2 - 57 4.1e-09 Beta-galactosidase, galactose-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 62, 237
AciI CCGC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 169
AfaI GTAC 1 cut(s) 79
AleI CACNNNNGTG 1 cut(s) 236
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 169
AspLEI GCGC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 223
BaeI ACNNNNGTAYC 2 cut(s) 116, 149
BccI CCATC 2 cut(s) 169, 242
BcoDI GTCTC 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 143, 264
Bse1I ACTGG 2 cut(s) 13, 35
BseDI CCNNGG 2 cut(s) 143, 264
BseGI GGATG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 13, 35
BseRI GAGGAG 1 cut(s) 203
Bsh1236I CGCG 2 cut(s) 62, 237
BsmAI GTCTC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 1 cut(s) 235
BspFNI CGCG 2 cut(s) 62, 237
BsrI ACTGG 2 cut(s) 13, 35
BssECI CCNNGG 2 cut(s) 143, 264
BssMI GATC 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 37, 56
BstC8I GCNNGC 3 cut(s) 64, 195, 199
BstF5I GGATG 1 cut(s) 161
BstFNI CGCG 2 cut(s) 62, 237
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 2 cut(s) 62, 237
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 3 cut(s) 64, 195, 199
CfoI GCGC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 78
CviAII CATG 2 cut(s) 41, 137
CviJI RGCY 3 cut(s) 154, 160, 193
CviKI_1 RGCY 3 cut(s) 154, 160, 193
CviQI GTAC 1 cut(s) 78
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
FaeI CATG 2 cut(s) 44, 140
FaiI YATR 2 cut(s) 42, 138
FatI CATG 2 cut(s) 40, 136
FauI CCCGC 1 cut(s) 242
FokI GGATG 1 cut(s) 148
GlaI GCGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 62
Hin1II CATG 2 cut(s) 44, 140
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 1 cut(s) 121
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 85
HpyCH4III ACNGT 2 cut(s) 37, 56
HpyCH4V TGCA 1 cut(s) 66
Hsp92II CATG 2 cut(s) 44, 140
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 3 cut(s) 16, 70, 183
MaeIII GTNAC 4 cut(s) 4, 50, 205, 229
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 36, 212
MluCI AATT 3 cut(s) 67, 101, 169
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 3 cut(s) 153, 181, 259
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 2 cut(s) 45, 236
MvnI CGCG 2 cut(s) 62, 237
NdeII GATC 1 cut(s) 217
NlaIII CATG 2 cut(s) 44, 140
NmuCI GTSAC 1 cut(s) 229
OliI CACNNNNGTG 1 cut(s) 236
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 2 cut(s) 45, 236
SaqAI TTAA 1 cut(s) 90
Sau3AI GATC 1 cut(s) 217
SchI GAGTC 1 cut(s) 115
SetI ASST 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 55
SmiMI CAYNNNNRTG 2 cut(s) 45, 236
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 3 cut(s) 67, 101, 169
SsiI CCGC 1 cut(s) 235
TaaI ACNGT 2 cut(s) 37, 56
TasI AATT 3 cut(s) 67, 101, 169
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 7, 29
XapI RAATTY 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.