Rroxscaffold_2G00101750

Galactose binding lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001191
Physical Location & Seq
Reverse (-)
23644876 .. 23646187
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101750.1

Sequence Viewer

Length: 270 bp
ATGCTGTACCTGCTGGCGACCCATGTTCCGGATTGCACGAACCCAATCACGGGGCGTTCACGTTATTTTGGTACATTCAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCTACTCAACAATGGTATCATGTTCCTCGGTCTTCGCTCAAGCCATCCCAAAATCTGTTGGTGGTATTTGAGGAGCTTGCTGGCGATGTTACAAAGATTGATCTTCTGAAAGTCACCCACGTGTTGGAAAATGGCAGACCAAGAACTGAGGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

89

Amino Acids

10.17

Weight (kDa)

8.96

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 235
AccIII TCCGGA 1 cut(s) 28
AcvI CACGTG 1 cut(s) 232
AfaI GTAC 2 cut(s) 8, 73
AfiI CCNNNNNNNGG 4 cut(s) 28, 49, 50, 235
AflIII ACRYGT 1 cut(s) 231
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 110
Aor13HI TCCGGA 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BbrPI CACGTG 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 135
BccI CCATC 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 49, 50, 235
BseAI TCCGGA 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 4 cut(s) 28, 49, 50, 235
BseMII CTCAG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 197
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 4 cut(s) 28, 49, 50, 235
BsmAI GTCTC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 250
BspEI TCCGGA 1 cut(s) 28
BspMI ACCTGC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 1 cut(s) 211
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 3 cut(s) 15, 189, 193
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 155
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 3 cut(s) 15, 189, 193
Csp6I GTAC 2 cut(s) 7, 72
CviAII CATG 2 cut(s) 23, 131
CviJI RGCY 2 cut(s) 154, 187
CviKI_1 RGCY 2 cut(s) 154, 187
CviQI GTAC 2 cut(s) 7, 72
DdeI CTNAG 1 cut(s) 258
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eco72I CACGTG 1 cut(s) 232
FaeI CATG 2 cut(s) 26, 134
FaiI YATR 2 cut(s) 24, 132
FatI CATG 2 cut(s) 22, 130
FokI GGATG 1 cut(s) 142
HapII CCGG 1 cut(s) 29
Hin1II CATG 2 cut(s) 26, 134
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 2 cut(s) 29, 79
Hpy8I GTNNAC 1 cut(s) 59
HpyCH4IV ACGT 2 cut(s) 61, 231
HpyCH4V TGCA 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 2 cut(s) 61, 231
Hsp92II CATG 2 cut(s) 26, 134
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 4 cut(s) 23, 42, 64, 177
MaeII ACGT 2 cut(s) 61, 231
MaeIII GTNAC 2 cut(s) 199, 223
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 2 cut(s) 135, 206
MluCI AATT 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 133, 216
MnlI CCTC 3 cut(s) 147, 175, 253
MroI TCCGGA 1 cut(s) 28
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 211
NlaIII CATG 2 cut(s) 26, 134
NmuCI GTSAC 1 cut(s) 223
OliI CACNNNNGTG 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 235
PmaCI CACGTG 1 cut(s) 232
PmlI CACGTG 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 232
PspCI CACGTG 1 cut(s) 232
RsaI GTAC 2 cut(s) 8, 73
RsaNI GTAC 2 cut(s) 7, 72
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 1 cut(s) 211
SetI ASST 5 cut(s) 12, 64, 115, 189, 234
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 95
TaiI ACGT 2 cut(s) 64, 234
TaqII GACCGA 1 cut(s) 129
TasI AATT 1 cut(s) 95
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.