Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001191

Physical Location & Seq

Genomic Coordinates Reverse (-)

35835083 .. 35836263

Gene Structure 1181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008727

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAATCTTGGTTCTCCAACTTCCACCTCTGCAGTGAATTGGACGAGGGTGTCTATAAGGACACAAAATCAACAGCCACCGACTTGGTATAAGGCCAATTTTGATGCACCTGAAGGGGATGAGCCTTTGGCTTTAGACATAGGGAGCATGGGGAAGGGTGAAGTACGGATAGCATTGGAAGATACTGGACTGTTCATGCTAATGGTAACTGCAGCGCTTGCAGTTATTTTAGTACATTCAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCGACTCAACAATGGTATCATGTTCCTCGGTCTTGGCTCAAGCCATCCCAAAATCTATTGGTGGTATATGAGGAGGTTGCTGGCGATGTTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

123

Amino Acids

13.44

Weight (kDa)

8.14

Isoelectric Point (pI)

24.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	27 - 57	7.1e-08	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18710
fragaria_vesca	FvH4_1g27957 FvH4_1g28030
rosa_chinensis	RchiOBHm_Chr2g0113301 RchiOBHm_Chr2g0122841 RchiOBHm_Chr4g0401441 RchiOBHm_Chr4g0401561 RchiOBHm_Chr4g0416291 RchiOBHm_Chr5g0037611 RchiOBHm_Chr5g0049841 RchiOBHm_Chr5g0066171 RchiOBHm_Chr5g0083681 RchiOBHm_Chr6g0266211 RchiOBHm_Chr7g0208141 RchiOBHm_Chr7g0224481 RchiOBHm_Chr7g0232071
rosa_laevigata	RLG00000001559 RLG00000008727 RLG00000008954 RLG00000011600 RLG00000012442 RLG00000013273 RLG00000013821 RLG00000017804 RLG00000021255 RLG00000030030 RLG00000034328 RLG00000034997
rosa_multiflora	Rmu_sc0001524.1_g000008 Rmu_sc0004679.1_g000008 Rmu_sc0006792.1_g000040 Rmu_sc0008528.1_g000002 Rmu_sc0016149.1_g000001 Rmu_sc0020923.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003710 Rroxscaffold_1G00003720 Rroxscaffold_2G00101750 Rroxscaffold_2G00137690 Rroxscaffold_3G00261390
rosa_rugosa	Rorug01G0086800 Rorug03G0275400 Rorug03G0275400 Rorug03G0275500 Rorug03G0275600
rosa_samantha	Rh1BG230300 Rh1DG258100 Rh2AG301400 Rh5BG563200 Rh5CG423100 Rh5CG585400 Rh5DG351000 Rh5DG354200 Rh5DG465100 Rh6CG409900 Rh7AG234300 Rh7DG241700
rosa_wichuraiana	Rw5G050500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	165, 234
AfeI	AGCGCT	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	271
Aor51HI	AGCGCT	1 cut(s)	216
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	170
BaeI	ACNNNNGTAYC	2 cut(s)	271, 304
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	271
BfmI	CTRYAG	2 cut(s)	30, 210
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	124, 316
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	224
BshFI	GGCC	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	95
BspMAI	CTGCAG	2 cut(s)	34, 214
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	219, 354
BstF5I	GGATG	2 cut(s)	124, 316
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	30, 210
BstV1I	GCAGC	1 cut(s)	224
BstXI	CCANNNNNNTGG	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	124, 316
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	219, 354
CfoI	GCGC	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	164, 233
CviAII	CATG	3 cut(s)	148, 196, 292
CviJI	RGCY	6 cut(s)	76, 95, 124, 131, 309, 315
CviKI_1	RGCY	6 cut(s)	76, 95, 124, 131, 309, 315
CviQI	GTAC	2 cut(s)	164, 233
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
Eco47III	AGCGCT	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	132
FaeI	CATG	3 cut(s)	151, 199, 295
FaiI	YATR	8 cut(s)	56, 90, 140, 149, 197, 293, 339, 341
FatI	CATG	3 cut(s)	147, 195, 291
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	2 cut(s)	131, 303
Fsp4HI	GCNGC	1 cut(s)	213
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	151, 199, 295
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	2 cut(s)	4, 276
HphI	GGTGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	240
HpyAV	CCTTC	2 cut(s)	107, 148
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	32, 107, 212, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	151, 199, 295
HspAI	GCGC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	4 cut(s)	123, 171, 225, 338
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	205, 360
MboII	GAAGA	1 cut(s)	191
MluCI	AATT	3 cut(s)	37, 97, 256
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	2 cut(s)	41, 294
MnlI	CCTC	5 cut(s)	37, 39, 308, 336, 339
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	218
NlaIII	CATG	3 cut(s)	151, 199, 295
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PstI	CTGCAG	2 cut(s)	34, 214
RsaI	GTAC	2 cut(s)	165, 234
RsaNI	GTAC	2 cut(s)	164, 233
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	270
SetI	ASST	3 cut(s)	29, 112, 350
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	2 cut(s)	30, 210
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	3 cut(s)	37, 97, 256
TaaI	ACNGT	1 cut(s)	192
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	3 cut(s)	37, 97, 256
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	17, 184
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.