FvH4_2g21831

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000837
Physical Location & Seq
Forward (+)
18050082 .. 18051354
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21831.t1

Sequence Viewer

Length: 687 bp
ATGGAGAATAGTCAGTATACTACTTACAGAGTTAGTGGACAAGGGCTTGCATACTCCGGGGTGACCAGGATTCCCAGAATTTTCATCCACCCACCAGAGACTGTAAAGTACACATCAGCAGAAAAGAGTACTGTCAAGCTTCAAATCTTAGTTATTACTGTCACAGGCATTGGGAATGGTCGAAGGAAATGGTCAATGCACTTAAAGATGCATGCGAAACATGGGGTTTTATTTCAAACAGTTAACCATGGCCACTTGCTATCATGGAGGAGATGTTTGATGGTATTCATAGATTCCATGAGCAGGCCCCAGAAGACAAGATGGAGTTGTACTCTCGTGACTATAAGAAGCAAGCTAAATGGCAGTGGAGATCCAAAATTGTGTGCAAAATCAGGAGCAGATTGGAGAGACACCTTTTTCTGCAGAGCCGTAGATGCTAAATGGTACTTTAAGGCACTGCCAAAAGTGTGCAGGTACCCTTTTACCTCTAGAGCCAGCCTTTATGATGATTATATCCTTTGTTCTAAAAGATTGAGTTTTGAACAATTCATGACTACATCATGTGTTTGCAGACGTGAAATGAGTGAGTATATCAAAAACCTGACTGAACTTCAGAAAGTGCCACCCGAATTACTATTAGAAGCATCATGGCTTAGCAAGGATCACCTGACACACATGGGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

229

Amino Acids

26.28

Weight (kDa)

9.74

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 462
Acc65I GGTACC 1 cut(s) 474
AccB1I GGYRCC 2 cut(s) 474, 680
AccI GTMKAC 1 cut(s) 17
AclWI GGATC 2 cut(s) 365, 669
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 596
AfaI GTAC 5 cut(s) 110, 130, 331, 446, 476
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 3 cut(s) 143, 236, 542
AjiI CACGTC 1 cut(s) 575
AjnI CCWGG 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 678
AluBI AGCT 2 cut(s) 139, 355
AluI AGCT 2 cut(s) 139, 355
Alw26I GTCTC 2 cut(s) 92, 402
AlwI GGATC 2 cut(s) 365, 669
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 2 cut(s) 250, 305
ApoI RAATTY 1 cut(s) 78
Asp718I GGTACC 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 306
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 73, 656
BalI TGGCCA 1 cut(s) 252
BanI GGYRCC 2 cut(s) 474, 680
BauI CACGAG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 320
BccI CCATC 2 cut(s) 274, 315
BceAI ACGGC 1 cut(s) 413
BciT130I CCWGG 1 cut(s) 67
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 92, 402
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 1 cut(s) 421
BfuAI ACCTGC 1 cut(s) 462
BlpI GCTNAGC 1 cut(s) 653
BmcAI AGTACT 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 58, 67
BmgBI CACGTC 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 3 cut(s) 308, 476, 682
BmrFI CCNGG 2 cut(s) 58, 67
BmsI GCATC 3 cut(s) 198, 424, 653
BpiI GAAGAC 1 cut(s) 320
BplI GAGNNNNNCTC 2 cut(s) 316, 348
Bpu1102I GCTNAGC 1 cut(s) 653
BpuMI CCSGG 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 57, 247
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 2 cut(s) 57, 247
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 303
BseRI GAGGAG 1 cut(s) 283
BsgI GTGCAG 1 cut(s) 490
BshFI GGCC 2 cut(s) 252, 307
BshNI GGYRCC 2 cut(s) 474, 680
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 92, 402
BsnI GGCC 2 cut(s) 252, 307
Bsp143I GATC 2 cut(s) 370, 661
Bsp1720I GCTNAGC 1 cut(s) 653
Bsp19I CCATGG 1 cut(s) 247
BspANI GGCC 2 cut(s) 252, 307
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 3 cut(s) 308, 476, 682
BspMAI CTGCAG 1 cut(s) 425
BspMI ACCTGC 1 cut(s) 462
BspPI GGATC 2 cut(s) 365, 669
BspT107I GGYRCC 2 cut(s) 474, 680
BssECI CCNNGG 2 cut(s) 57, 247
BssMI GATC 2 cut(s) 370, 661
BssNAI GTATAC 1 cut(s) 18
BssSI CACGAG 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 247
Bst1107I GTATAC 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 335
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 4 cut(s) 103, 133, 160, 241
BstC8I GCNNGC 5 cut(s) 48, 213, 305, 353, 496
BstDEI CTNAG 2 cut(s) 148, 653
BstDSI CCRYGG 1 cut(s) 247
BstEII GGTNACC 1 cut(s) 61
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 2 cut(s) 373, 664
BstMAI GTCTC 2 cut(s) 92, 402
BstMBI GATC 2 cut(s) 370, 661
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstNI CCWGG 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 215
BstPI GGTNACC 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 56, 65
BstSFI CTRYAG 1 cut(s) 421
BstV2I GAAGAC 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BstZ17I GTATAC 1 cut(s) 18
BsuRI GGCC 2 cut(s) 252, 307
BtgI CCRYGG 1 cut(s) 247
BtrI CACGTC 1 cut(s) 575
BtsCI GGATG 1 cut(s) 84
BtsI GCAGTG 2 cut(s) 370, 455
BtsIMutI CAGTG 2 cut(s) 370, 455
BveI ACCTGC 1 cut(s) 462
Cac8I GCNNGC 5 cut(s) 48, 213, 305, 353, 496
CaiI CAGNNNCTG 1 cut(s) 101
CciI TCATGA 1 cut(s) 549
Cfr13I GGNCC 1 cut(s) 306
Csp6I GTAC 5 cut(s) 109, 129, 330, 445, 475
CviAII CATG 9 cut(s) 212, 221, 248, 264, 298, 550, 561, 648, 676
CviJI RGCY 9 cut(s) 46, 139, 252, 307, 355, 428, 494, 498, 652
CviKI_1 RGCY 9 cut(s) 46, 139, 252, 307, 355, 428, 494, 498, 652
CviQI GTAC 5 cut(s) 109, 129, 330, 445, 475
DdeI CTNAG 2 cut(s) 148, 653
DpnI GATC 2 cut(s) 372, 663
DpnII GATC 2 cut(s) 370, 661
EaeI YGGCCR 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 596
Eco91I GGTNACC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 306
EcoO65I GGTNACC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 9 cut(s) 215, 224, 251, 267, 301, 553, 564, 651, 679
FatI CATG 9 cut(s) 211, 220, 247, 263, 297, 549, 560, 647, 675
FblI GTMKAC 1 cut(s) 17
FokI GGATG 1 cut(s) 71
FspBI CTAG 1 cut(s) 489
HaeIII GGCC 2 cut(s) 252, 307
HapII CCGG 1 cut(s) 57
Hin1II CATG 9 cut(s) 215, 224, 251, 267, 301, 553, 564, 651, 679
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 2 cut(s) 70, 293
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 73, 656
Hpy166II GTNNAC 4 cut(s) 18, 38, 111, 244
Hpy188I TCNGA 1 cut(s) 615
Hpy188III TCNNGA 4 cut(s) 337, 393, 489, 550
Hpy8I GTNNAC 4 cut(s) 18, 38, 111, 244
HpyAV CCTTC 1 cut(s) 177
HpyCH4III ACNGT 4 cut(s) 103, 133, 160, 241
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 7 cut(s) 50, 199, 211, 386, 423, 471, 570
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 2 cut(s) 148, 653
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 9 cut(s) 215, 224, 251, 267, 301, 553, 564, 651, 679
KpnI GGTACC 1 cut(s) 478
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 370, 661
LmnI GCTCC 1 cut(s) 395
LweI GCATC 3 cut(s) 198, 424, 653
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 3 cut(s) 61, 160, 337
MalI GATC 2 cut(s) 372, 663
MboI GATC 2 cut(s) 370, 661
MboII GAAGA 1 cut(s) 325
MflI RGATCY 1 cut(s) 370
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 4 cut(s) 78, 377, 545, 629
MluNI TGGCCA 1 cut(s) 252
MnlI CCTC 2 cut(s) 261, 496
Mox20I TGGCCA 1 cut(s) 252
Mph1103I ATGCAT 1 cut(s) 213
MscI TGGCCA 1 cut(s) 252
MseI TTAA 3 cut(s) 203, 243, 450
MslI CAYNNNNRTG 1 cut(s) 678
Msp20I TGGCCA 1 cut(s) 252
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 58, 67
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 434
NciI CCSGG 1 cut(s) 58
NcoI CCATGG 1 cut(s) 247
NdeII GATC 2 cut(s) 370, 661
NlaIII CATG 9 cut(s) 215, 224, 251, 267, 301, 553, 564, 651, 679
NlaIV GGNNCC 3 cut(s) 308, 476, 682
NmuCI GTSAC 3 cut(s) 61, 160, 337
NsiI ATGCAT 1 cut(s) 213
NspI RCATGY 1 cut(s) 215
OliI CACNNNNGTG 1 cut(s) 678
PaeI GCATGC 1 cut(s) 215
PagI TCATGA 1 cut(s) 549
PfeI GAWTC 2 cut(s) 70, 293
Psp6I CCWGG 1 cut(s) 65
PspEI GGTNACC 1 cut(s) 61
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 3 cut(s) 308, 476, 682
PspPI GGNCC 1 cut(s) 306
PstI CTGCAG 1 cut(s) 425
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 5 cut(s) 110, 130, 331, 446, 476
RsaNI GTAC 5 cut(s) 109, 129, 330, 445, 475
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 3 cut(s) 203, 243, 450
Sau3AI GATC 2 cut(s) 370, 661
Sau96I GGNCC 1 cut(s) 306
ScaI AGTACT 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 58, 67
SetI ASST 8 cut(s) 141, 357, 416, 476, 488, 577, 603, 669
SfaNI GCATC 3 cut(s) 198, 424, 653
SfcI CTRYAG 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 678
SphI GCATGC 1 cut(s) 215
Sse9I AATT 4 cut(s) 78, 377, 545, 629
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 2 cut(s) 56, 65
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 4 cut(s) 103, 133, 160, 241
TaiI ACGT 1 cut(s) 577
TaqI TCGA 1 cut(s) 181
TasI AATT 4 cut(s) 78, 377, 545, 629
TatI WGTACW 3 cut(s) 108, 128, 329
TfiI GAWTC 2 cut(s) 70, 293
Tru1I TTAA 3 cut(s) 203, 243, 450
Tru9I TTAA 3 cut(s) 203, 243, 450
TscAI CASTG 2 cut(s) 370, 462
TseFI GTSAC 3 cut(s) 61, 160, 337
Tsp45I GTSAC 3 cut(s) 61, 160, 337
TspDTI ATGAA 3 cut(s) 73, 277, 538
TspRI CASTG 2 cut(s) 370, 462
XapI RAATTY 1 cut(s) 78
XbaI TCTAGA 1 cut(s) 488
XceI RCATGY 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 17
XspI CTAG 1 cut(s) 489
ZrmI AGTACT 1 cut(s) 130
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.