Rroxscaffold_7G00179930

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
19418075 .. 19425393
7319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179930.1

Sequence Viewer

Length: 165 bp
ATGGAGCTCTACTCTCGTGACTTTAAGAAGCAGGTCAACTTTAATGGAAGTGGAGATCCGAAATTGTGTGCAAAATCGGGAGCAGATTGGAGAGACACTATTCTCGCAGAGCCGTCGATGATAATTGGGACTTTGGGCCACTGCCACAAGTGTGCAGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

54

Amino Acids

5.93

Weight (kDa)

8.55

Isoelectric Point (pI)

17.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 50
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 9
BauI CACGAG 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 9
BceAI ACGGC 1 cut(s) 97
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BcoDI GTCTC 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 136
BplI GAGNNNNNCTC 1 cut(s) 28
BshFI GGCC 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 50
BssMI GATC 1 cut(s) 55
BssSI CACGAG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 15
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
BveI ACCTGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 136
CviJI RGCY 3 cut(s) 7, 112, 138
CviKI_1 RGCY 3 cut(s) 7, 112, 138
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 9
FaqI GGGAC 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 2 cut(s) 17, 78
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 118
HpyCH4V TGCA 2 cut(s) 71, 155
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 4, 80
LpnPI CCDG 2 cut(s) 17, 141
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 2 cut(s) 62, 123
MseI TTAA 2 cut(s) 24, 42
MslI CAYNNNNRTG 1 cut(s) 150
NdeII GATC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 17
OliI CACNNNNGTG 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 136
PsuI RGATCY 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 24, 42
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 9
SetI ASST 2 cut(s) 9, 36
SgeI CNNG 6 cut(s) 27, 29, 44, 90, 116, 160
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 2 cut(s) 62, 123
SstI GAGCTC 1 cut(s) 9
TaqI TCGA 1 cut(s) 116
TasI AATT 2 cut(s) 62, 123
Tru1I TTAA 2 cut(s) 24, 42
Tru9I TTAA 2 cut(s) 24, 42
TscAI CASTG 1 cut(s) 146
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspRI CASTG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.