Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004861.1

Orthogroup ID

OG0000837

Physical Location & Seq

Genomic Coordinates Forward (+)

25825 .. 29880

Gene Structure 4056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004861.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgcaactattatccaattttcccgagcctgaactgactctaggcacaatcaaacattcagatccctcatttcttaccttagtcctgcaagacgagattggagggctccaagttctcaataaggatcaatgggttgacgtgccgccagtggatggagcatttgtagcaaatcttggtgaccttatgcagctcattactaataacaagttcaagagtgtggaacatagagtgctagctaccccgcttgtcaagccacgaatatcagttgcatctttctttgctcctgcagatagcgacaaacgtgtcaagccatatgggcctataaaggatcttctatctgagaacaatcccccaatatacagggacaccctttacggagactcggagagtatactgggtgtcaaaggtcttgcagactccagggtgaccaagattcccagaatattcatccaccgaccagagactgtaaagtacacaacaccagaaaatggtgtcaaacttcagatcccagtcattgatctcaaaggcattgggaatgatcacagtctagaggaaatggtcaatgcacttaaagatgcatgtgaaacatggggattctttcaaatagttaaccatggagttccacttgctgctatggaggagatgcttgacagtattcgtagattccatgagcaggccccagaagacaagatggagctctactctcgtgactttaagaagcaggtcaactttaatggcagtggagatctgaaattgtgtgcaaaatcaggagcagattggagggacactattctgcagagctgtcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

269

Amino Acids

30.12

Weight (kDa)

5.58

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830 FvH4_2g21831 FvH4_2g21910
malus_domestica	MD05G1200300.v1.1 MD05G1205100.v1.1 MD10G1186700.v1.1 MD10G1187000.v1.1
prunus_persica	Prupe.8G226500_v2.0.a1 Prupe.8G226700_v2.0.a1 Prupe.8G226800_v2.0.a1
pyrus_communis	pycom05g18690 pycom05g18720 pycom05g19130 pycom10g16150 pycom10g16170
rosa_chinensis	RchiOBHm_Chr6g0288651 RchiOBHm_Chr6g0288661 RchiOBHm_Chr6g0288671 RchiOBHm_Chr6g0288701 RchiOBHm_Chr6g0288711 RchiOBHm_Chr6g0288761 RchiOBHm_Chr6g0310751
rosa_laevigata	RLG00000012367 RLG00000012370 RLG00000012375 RLG00000012379 RLG00000012382 RLG00000012383 RLG00000012384 RLG00000012386
rosa_multiflora	Rmu_co8507331.1_g000002 Rmu_sc0004688.1_g000011 Rmu_sc0004861.1_g000006 Rmu_sc0004861.1_g000009 Rmu_sc0008285.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179890 Rroxscaffold_7G00179930 Rroxscaffold_7G00179940 Rroxscaffold_7G00179950 Rroxscaffold_7G00179960
rosa_rugosa	Rorug06G0197500 Rorug06G0197600 Rorug06G0197600 Rorug06G0197700 Rorug06G0383000
rosa_samantha	Rh6AG309200 Rh6AG309300 Rh6AG309400 Rh6AG496800 Rh6BG314400 Rh6BG314500 Rh6BG314600 Rh6BG314700 Rh6BG314800 Rh6BG315300 Rh6CG321800 Rh6CG321900 Rh6CG322000 Rh6CG322800 Rh6DG307600 Rh6DG307700 Rh6DG307800 Rh6DG308500 Rh6DG498200
rosa_wichuraiana	Rw6G026700 Rw6G026710 Rw6G026740 Rw6G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	712
AccB7I	CCANNNNNTGG	2 cut(s)	152, 488
AccI	GTMKAC	1 cut(s)	391
AciI	CCGC	2 cut(s)	143, 242
AclWI	GGATC	4 cut(s)	56, 132, 336, 499
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	3 cut(s)	152, 488, 673
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	211, 602
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	4 cut(s)	190, 236, 697, 801
AluI	AGCT	4 cut(s)	190, 236, 697, 801
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	2 cut(s)	372, 455
AlwI	GGATC	4 cut(s)	56, 132, 336, 499
AlwNI	CAGNNNCTG	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	317, 675
ApeKI	GCWGC	2 cut(s)	187, 629
AspS9I	GGNCC	2 cut(s)	317, 676
AsuHPI	GGTGA	2 cut(s)	188, 436
AsuNHI	GCTAGC	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	23
BanII	GRGCYC	2 cut(s)	108, 699
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	2 cut(s)	199, 616
BccI	CCATC	2 cut(s)	146, 685
BcgI	CGANNNNNNTGC	1 cut(s)	785
BciT130I	CCWGG	1 cut(s)	421
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	372, 455
BfaI	CTAG	3 cut(s)	41, 233, 548
BfmI	CTRYAG	2 cut(s)	285, 794
BfuAI	ACCTGC	1 cut(s)	712
BglI	GCCNNNNNGGC	1 cut(s)	316
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	3 cut(s)	143, 188, 630
BlsI	GCNGC	3 cut(s)	144, 189, 631
Bme1390I	CCNGG	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	23
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	317, 676
BmiI	GGNNCC	2 cut(s)	107, 678
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	2 cut(s)	404, 503
BmsI	GCATC	3 cut(s)	278, 565, 633
BmtI	GCTAGC	1 cut(s)	236
BmuI	ACTGGG	2 cut(s)	404, 503
BpiI	GAAGAC	1 cut(s)	690
BplI	GAGNNNNNCTC	2 cut(s)	686, 718
BpmI	CTGGAG	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	420, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 488, 673
Bse1I	ACTGG	3 cut(s)	146, 399, 509
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	2 cut(s)	420, 613
BseGI	GGATG	2 cut(s)	157, 447
BseLI	CCNNNNNNNGG	3 cut(s)	152, 488, 673
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	146, 399, 509
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	2 cut(s)	199, 616
BshFI	GGCC	2 cut(s)	319, 677
BsiHKAI	GWGCWC	1 cut(s)	699
BsiHKCI	CYCGRG	1 cut(s)	23
BslFI	GGGAC	2 cut(s)	377, 797
BslI	CCNNNNNNNGG	3 cut(s)	152, 488, 673
BsmAI	GTCTC	2 cut(s)	372, 455
BsmFI	GGGAC	2 cut(s)	377, 797
BsnI	GGCC	2 cut(s)	319, 677
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	108, 699
Bsp143I	GATC	7 cut(s)	61, 124, 328, 504, 517, 538, 745
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	2 cut(s)	143, 242
BspANI	GGCC	2 cut(s)	319, 677
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	107, 678
BspMAI	CTGCAG	2 cut(s)	289, 798
BspMI	ACCTGC	1 cut(s)	712
BspOI	GCTAGC	1 cut(s)	236
BspPI	GGATC	4 cut(s)	56, 132, 336, 499
BsrI	ACTGG	3 cut(s)	146, 399, 509
BssECI	CCNNGG	2 cut(s)	420, 613
BssMI	GATC	7 cut(s)	61, 124, 328, 504, 517, 538, 745
BssNAI	GTATAC	1 cut(s)	392
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	1 cut(s)	613
Bst1107I	GTATAC	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	3 cut(s)	466, 545, 653
BstC8I	GCNNGC	2 cut(s)	234, 675
BstDEI	CTNAG	2 cut(s)	79, 339
BstDSI	CCRYGG	1 cut(s)	613
BstEII	GGTNACC	2 cut(s)	176, 424
BstF5I	GGATG	2 cut(s)	157, 447
BstKTI	GATC	7 cut(s)	64, 127, 331, 507, 520, 541, 748
BstMAI	GTCTC	2 cut(s)	372, 455
BstMBI	GATC	7 cut(s)	61, 124, 328, 504, 517, 538, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 250, 316
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	582
BstPI	GGTNACC	2 cut(s)	176, 424
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	2 cut(s)	285, 794
BstV1I	GCAGC	2 cut(s)	199, 616
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	4 cut(s)	61, 328, 504, 745
BstYI	RGATCY	4 cut(s)	61, 328, 504, 745
BstZ17I	GTATAC	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	319, 677
BtgI	CCRYGG	1 cut(s)	613
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	157, 447
BtsI	GCAGTG	1 cut(s)	745
BtsIMutI	CAGTG	2 cut(s)	153, 745
BveI	ACCTGC	1 cut(s)	712
Cac8I	GCNNGC	2 cut(s)	234, 675
CaiI	CAGNNNCTG	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	317, 676
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	4 cut(s)	579, 588, 614, 668
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	2 cut(s)	79, 339
DpnI	GATC	7 cut(s)	63, 126, 330, 506, 519, 540, 747
DpnII	GATC	7 cut(s)	61, 124, 328, 504, 517, 538, 745
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	613
Eco24I	GRGCYC	2 cut(s)	108, 699
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	23
Eco91I	GGTNACC	2 cut(s)	176, 424
EcoICRI	GAGCTC	1 cut(s)	697
EcoO109I	RGGNCCY	1 cut(s)	676
EcoO65I	GGTNACC	2 cut(s)	176, 424
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	613
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	2 cut(s)	108, 699
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	4 cut(s)	582, 591, 617, 671
FaqI	GGGAC	2 cut(s)	377, 797
FatI	CATG	4 cut(s)	578, 587, 613, 667
FauI	CCCGC	1 cut(s)	249
FauNDI	CATATG	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	143, 188, 630
FokI	GGATG	2 cut(s)	164, 434
FriOI	GRGCYC	2 cut(s)	108, 699
Fsp4HI	GCNGC	3 cut(s)	143, 188, 630
FspBI	CTAG	3 cut(s)	41, 233, 548
GluI	GCNGC	3 cut(s)	143, 188, 630
GsuI	CTGGAG	1 cut(s)	403
HaeIII	GGCC	2 cut(s)	319, 677
Hin1II	CATG	4 cut(s)	582, 591, 617, 671
HincII	GTYRAC	3 cut(s)	136, 610, 727
HindII	GTYRAC	3 cut(s)	136, 610, 727
HinfI	GANTC	6 cut(s)	37, 380, 416, 433, 594, 663
HpaI	GTTAAC	1 cut(s)	610
HphI	GGTGA	2 cut(s)	188, 436
Hpy166II	GTNNAC	5 cut(s)	136, 392, 474, 610, 727
Hpy188I	TCNGA	5 cut(s)	61, 340, 385, 504, 750
Hpy188III	TCNNGA	5 cut(s)	23, 211, 548, 707, 768
Hpy8I	GTNNAC	5 cut(s)	136, 392, 474, 610, 727
HpyCH4III	ACNGT	3 cut(s)	466, 545, 653
HpyCH4IV	ACGT	2 cut(s)	138, 301
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 250, 316
HpyF3I	CTNAG	2 cut(s)	79, 339
HpySE526I	ACGT	2 cut(s)	138, 301
Hsp92II	CATG	4 cut(s)	582, 591, 617, 671
Ksp22I	TGATCA	1 cut(s)	538
KspAI	GTTAAC	1 cut(s)	610
Kzo9I	GATC	7 cut(s)	61, 124, 328, 504, 517, 538, 745
LmnI	GCTCC	5 cut(s)	111, 155, 286, 694, 770
Lsp1109I	GCAGC	2 cut(s)	199, 616
LweI	GCATC	3 cut(s)	278, 565, 633
MaeI	CTAG	3 cut(s)	41, 233, 548
MaeII	ACGT	2 cut(s)	138, 301
MaeIII	GTNAC	3 cut(s)	176, 424, 707
MalI	GATC	7 cut(s)	63, 126, 330, 506, 519, 540, 747
MboI	GATC	7 cut(s)	61, 124, 328, 504, 517, 538, 745
MboII	GAAGA	2 cut(s)	323, 695
MflI	RGATCY	4 cut(s)	61, 328, 504, 745
MhlI	GDGCHC	2 cut(s)	108, 699
MluCI	AATT	2 cut(s)	16, 752
MlyI	GAGTC	3 cut(s)	31, 374, 410
MnlI	CCTC	5 cut(s)	76, 95, 544, 631, 774
Mph1103I	ATGCAT	1 cut(s)	580
MseI	TTAA	4 cut(s)	570, 609, 714, 732
MspR9I	CCNGG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	3 cut(s)	164, 250, 316
NcoI	CCATGG	1 cut(s)	613
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	7 cut(s)	61, 124, 328, 504, 517, 538, 745
NheI	GCTAGC	1 cut(s)	232
NlaIII	CATG	4 cut(s)	582, 591, 617, 671
NlaIV	GGNNCC	2 cut(s)	107, 678
NmuCI	GTSAC	3 cut(s)	176, 424, 707
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	433, 594, 663
PflMI	CCANNNNNTGG	2 cut(s)	152, 488
PkrI	GCNGC	3 cut(s)	144, 189, 631
PleI	GAGTC	3 cut(s)	31, 374, 410
PpsI	GAGTC	3 cut(s)	31, 374, 410
Psp124BI	GAGCTC	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	419
PspEI	GGTNACC	2 cut(s)	176, 424
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	107, 678
PspPI	GGNCC	2 cut(s)	317, 676
PstI	CTGCAG	2 cut(s)	289, 798
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	4 cut(s)	61, 328, 504, 745
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SacI	GAGCTC	1 cut(s)	699
SaqAI	TTAA	4 cut(s)	570, 609, 714, 732
SatI	GCNGC	3 cut(s)	143, 188, 630
Sau3AI	GATC	7 cut(s)	61, 124, 328, 504, 517, 538, 745
Sau96I	GGNCC	2 cut(s)	317, 676
SchI	GAGTC	3 cut(s)	31, 374, 410
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	2 cut(s)	108, 699
SfaNI	GCATC	3 cut(s)	278, 565, 633
SfcI	CTRYAG	2 cut(s)	285, 794
Sse9I	AATT	2 cut(s)	16, 752
SsiI	CCGC	2 cut(s)	143, 242
SspI	AATATT	1 cut(s)	444
SspMI	CTAG	3 cut(s)	41, 233, 548
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	613
TaaI	ACNGT	3 cut(s)	466, 545, 653
TaiI	ACGT	2 cut(s)	141, 304
TaqI	TCGA	1 cut(s)	805
TasI	AATT	2 cut(s)	16, 752
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	3 cut(s)	433, 594, 663
Tru1I	TTAA	4 cut(s)	570, 609, 714, 732
Tru9I	TTAA	4 cut(s)	570, 609, 714, 732
TscAI	CASTG	2 cut(s)	153, 745
TseFI	GTSAC	3 cut(s)	176, 424, 707
TseI	GCWGC	2 cut(s)	187, 629
Tsp45I	GTSAC	3 cut(s)	176, 424, 707
TspDTI	ATGAA	1 cut(s)	436
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	2 cut(s)	153, 745
Van91I	CCANNNNNTGG	2 cut(s)	152, 488
XbaI	TCTAGA	1 cut(s)	547
XceI	RCATGY	1 cut(s)	582
XmiI	GTMKAC	1 cut(s)	391
XspI	CTAG	3 cut(s)	41, 233, 548
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.