Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8507331.1

Orthogroup ID

OG0000837

Physical Location & Seq

Genomic Coordinates Forward (+)

2158 .. 3119

Gene Structure 962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8507331.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atggcagatgcagactacatggtagaaaaagaaaaagaactgtatgcgtttgatgaccttaaaataggtgtcaaagggctctcagactccggcgtggccaagattcccagaatcttcatccacccaccggagactgtaaagaacacatcaccagatgatggtgtcaaacttcaaatcccaattgttgatctcagatgcattgccaatgatcacgctcgagaaggaatagtgaaggcaattaaagatgcatgtgaaacatgggggttctttcagatagtcaaccatggagttccacttgctgttatggaggagatgcttcaaggtattcgtagatttcatgagcagcctgcagaagacaagatggagttgtactctcgtgacttcaagaattcgatcaatttctattgcagtggagatttgaaagtgcgtgcaaaatcagcagcagattggagagacaccttatcctgcagagccgtagatgataaatgggactttgaagcactgcctcaagtgtgcagacgtgaaataagtgagtacatcaaaaacttgattgaacttcagaacgtgatatccgaattactgtcggaagcattagggcttagcaaggatcacctagcacgcatggggtgcttgaaagctttctcattatcatgtcactattatccaatttgccccgagcctgaactgactctaggcacaatcaaacactcagatccctcatttcttaccttagtcctgcaagacgagattggagggctccaagttctccataaggatcaatgggttgacgtgccgccagtggatggagcatttgtagcaaatctaggtgaccttatgcaggtacttctctgttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

285

Amino Acids

32.05

Weight (kDa)

5.01

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830 FvH4_2g21831 FvH4_2g21910
malus_domestica	MD05G1200300.v1.1 MD05G1205100.v1.1 MD10G1186700.v1.1 MD10G1187000.v1.1
prunus_persica	Prupe.8G226500_v2.0.a1 Prupe.8G226700_v2.0.a1 Prupe.8G226800_v2.0.a1
pyrus_communis	pycom05g18690 pycom05g18720 pycom05g19130 pycom10g16150 pycom10g16170
rosa_chinensis	RchiOBHm_Chr6g0288651 RchiOBHm_Chr6g0288661 RchiOBHm_Chr6g0288671 RchiOBHm_Chr6g0288701 RchiOBHm_Chr6g0288711 RchiOBHm_Chr6g0288761 RchiOBHm_Chr6g0310751
rosa_laevigata	RLG00000012367 RLG00000012370 RLG00000012375 RLG00000012379 RLG00000012382 RLG00000012383 RLG00000012384 RLG00000012386
rosa_multiflora	Rmu_co8507331.1_g000002 Rmu_sc0004688.1_g000011 Rmu_sc0004861.1_g000006 Rmu_sc0004861.1_g000009 Rmu_sc0008285.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179890 Rroxscaffold_7G00179930 Rroxscaffold_7G00179940 Rroxscaffold_7G00179950 Rroxscaffold_7G00179960
rosa_rugosa	Rorug06G0197500 Rorug06G0197600 Rorug06G0197600 Rorug06G0197700 Rorug06G0383000
rosa_samantha	Rh6AG309200 Rh6AG309300 Rh6AG309400 Rh6AG496800 Rh6BG314400 Rh6BG314500 Rh6BG314600 Rh6BG314700 Rh6BG314800 Rh6BG315300 Rh6CG321800 Rh6CG321900 Rh6CG322000 Rh6CG322800 Rh6DG307600 Rh6DG307700 Rh6DG307800 Rh6DG308500 Rh6DG498200
rosa_wichuraiana	Rw6G026700 Rw6G026710 Rw6G026740 Rw6G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	829
AccB7I	CCANNNNNTGG	2 cut(s)	158, 803
AciI	CCGC	1 cut(s)	794
AclWI	GGATC	3 cut(s)	615, 707, 783
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	542
AfaI	GTAC	3 cut(s)	371, 536, 843
AfiI	CCNNNNNNNGG	4 cut(s)	127, 158, 803, 838
AgsI	TTSAA	7 cut(s)	173, 320, 385, 421, 497, 554, 634
AjiI	CACGTC	2 cut(s)	521, 790
AloI	GAACNNNNNNTCC	2 cut(s)	554, 586
AluBI	AGCT	1 cut(s)	638
AluI	AGCT	1 cut(s)	638
Alw26I	GTCTC	2 cut(s)	125, 447
AlwI	GGATC	3 cut(s)	615, 707, 783
Ama87I	CYCGRG	2 cut(s)	216, 674
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	343, 440
ApoI	RAATTY	1 cut(s)	388
Asp700I	GAANNNNTTC	1 cut(s)	638
AsuHPI	GGTGA	3 cut(s)	141, 602, 839
AvaI	CYCGRG	2 cut(s)	216, 674
BalI	TGGCCA	1 cut(s)	98
BanII	GRGCYC	2 cut(s)	81, 759
BauI	CACGAG	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	355, 452
BccI	CCATC	3 cut(s)	152, 355, 797
BceAI	ACGGC	1 cut(s)	458
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	125, 447
BfaI	CTAG	3 cut(s)	614, 692, 824
BfmI	CTRYAG	2 cut(s)	348, 466
BfuAI	ACCTGC	1 cut(s)	829
BisI	GCNGC	3 cut(s)	344, 441, 794
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	3 cut(s)	345, 442, 795
BmeT110I	CYCGRG	2 cut(s)	216, 674
BmgBI	CACGTC	2 cut(s)	521, 790
BmiI	GGNNCC	1 cut(s)	758
BmsI	GCATC	3 cut(s)	185, 235, 303
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
Bpu1102I	GCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	798, 828
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 158, 803, 838
Bse1I	ACTGG	1 cut(s)	797
Bse3DI	GCAATG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	2 cut(s)	117, 808
BseLI	CCNNNNNNNGG	4 cut(s)	127, 158, 803, 838
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	3 cut(s)	96, 205, 723
BseNI	ACTGG	1 cut(s)	797
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	2 cut(s)	355, 452
BsgI	GTGCAG	1 cut(s)	535
BshFI	GGCC	1 cut(s)	98
BsiHKCI	CYCGRG	2 cut(s)	216, 674
BsiSI	CCGG	2 cut(s)	90, 128
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	4 cut(s)	127, 158, 803, 838
BsmAI	GTCTC	2 cut(s)	125, 447
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	2 cut(s)	216, 674
Bsp1286I	GDGCHC	2 cut(s)	81, 759
Bsp143I	GATC	6 cut(s)	187, 208, 393, 607, 712, 775
Bsp1720I	GCTNAGC	1 cut(s)	599
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	1 cut(s)	794
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	3 cut(s)	95, 204, 722
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	758
BspMAI	CTGCAG	2 cut(s)	352, 470
BspMI	ACCTGC	1 cut(s)	829
BspPI	GGATC	3 cut(s)	615, 707, 783
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	797
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	6 cut(s)	187, 208, 393, 607, 712, 775
BssSI	CACGAG	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	42, 136, 582
BstAPI	GCANNNNNTGC	1 cut(s)	627
BstC8I	GCNNGC	3 cut(s)	348, 429, 619
BstDEI	CTNAG	5 cut(s)	82, 191, 599, 709, 730
BstDSI	CCRYGG	1 cut(s)	283
BstEII	GGTNACC	1 cut(s)	827
BstENI	CCTNNNNNAGG	1 cut(s)	836
BstF5I	GGATG	2 cut(s)	117, 808
BstKTI	GATC	6 cut(s)	190, 211, 396, 610, 715, 778
BstMAI	GTCTC	2 cut(s)	125, 447
BstMBI	GATC	6 cut(s)	187, 208, 393, 607, 712, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 627, 815
BstNSI	RCATGY	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	827
BstSFI	CTRYAG	2 cut(s)	348, 466
BstV1I	GCAGC	2 cut(s)	355, 452
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	283
BtrI	CACGTC	2 cut(s)	521, 790
BtsCI	GGATG	2 cut(s)	117, 808
BtsI	GCAGTG	2 cut(s)	415, 500
BtsIMutI	CAGTG	3 cut(s)	415, 500, 804
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	3 cut(s)	348, 429, 619
CciI	TCATGA	1 cut(s)	337
Csp6I	GTAC	3 cut(s)	370, 535, 842
CviAII	CATG	7 cut(s)	19, 249, 258, 284, 338, 622, 651
CviJI	RGCY	8 cut(s)	79, 98, 346, 473, 598, 638, 679, 757
CviKI_1	RGCY	8 cut(s)	79, 98, 346, 473, 598, 638, 679, 757
CviQI	GTAC	3 cut(s)	370, 535, 842
DdeI	CTNAG	5 cut(s)	82, 191, 599, 709, 730
DpnI	GATC	6 cut(s)	189, 210, 395, 609, 714, 777
DpnII	GATC	6 cut(s)	187, 208, 393, 607, 712, 775
EaeI	YGGCCR	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	2 cut(s)	81, 759
Eco32I	GATATC	1 cut(s)	570
Eco57I	CTGAAG	1 cut(s)	542
Eco88I	CYCGRG	2 cut(s)	216, 674
Eco91I	GGTNACC	1 cut(s)	827
EcoNI	CCTNNNNNAGG	1 cut(s)	836
EcoO65I	GGTNACC	1 cut(s)	827
EcoRI	GAATTC	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	283
EcoT22I	ATGCAT	2 cut(s)	200, 250
EcoT38I	GRGCYC	2 cut(s)	81, 759
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	7 cut(s)	22, 252, 261, 287, 341, 625, 654
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	7 cut(s)	18, 248, 257, 283, 337, 621, 650
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	344, 441, 794
FokI	GGATG	2 cut(s)	104, 815
FriOI	GRGCYC	2 cut(s)	81, 759
Fsp4HI	GCNGC	3 cut(s)	344, 441, 794
FspBI	CTAG	3 cut(s)	614, 692, 824
GluI	GCNGC	3 cut(s)	344, 441, 794
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	90, 128
Hin1II	CATG	7 cut(s)	22, 252, 261, 287, 341, 625, 654
HincII	GTYRAC	2 cut(s)	280, 787
HindII	GTYRAC	2 cut(s)	280, 787
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	4 cut(s)	86, 103, 111, 688
HpaII	CCGG	2 cut(s)	90, 128
HphI	GGTGA	3 cut(s)	141, 602, 839
Hpy166II	GTNNAC	2 cut(s)	280, 787
Hpy188I	TCNGA	7 cut(s)	85, 194, 273, 561, 574, 586, 712
Hpy188III	TCNNGA	4 cut(s)	218, 338, 377, 385
Hpy8I	GTNNAC	2 cut(s)	280, 787
HpyAV	CCTTC	2 cut(s)	215, 226
HpyCH4III	ACNGT	3 cut(s)	42, 136, 582
HpyCH4IV	ACGT	3 cut(s)	520, 564, 789
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 627, 815
HpyF3I	CTNAG	5 cut(s)	82, 191, 599, 709, 730
HpySE526I	ACGT	3 cut(s)	520, 564, 789
Hsp92II	CATG	7 cut(s)	22, 252, 261, 287, 341, 625, 654
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	6 cut(s)	187, 208, 393, 607, 712, 775
LmnI	GCTCC	2 cut(s)	762, 806
Lsp1109I	GCAGC	2 cut(s)	355, 452
LweI	GCATC	3 cut(s)	185, 235, 303
MaeI	CTAG	3 cut(s)	614, 692, 824
MaeII	ACGT	3 cut(s)	520, 564, 789
MaeIII	GTNAC	3 cut(s)	377, 653, 827
MalI	GATC	6 cut(s)	189, 210, 395, 609, 714, 777
MboI	GATC	6 cut(s)	187, 208, 393, 607, 712, 775
MboII	GAAGA	2 cut(s)	106, 365
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	2 cut(s)	81, 759
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	6 cut(s)	180, 237, 388, 397, 575, 666
MluNI	TGGCCA	1 cut(s)	98
MlyI	GAGTC	2 cut(s)	80, 682
MmeI	TCCRAC	1 cut(s)	564
MnlI	CCTC	4 cut(s)	301, 516, 727, 746
Mox20I	TGGCCA	1 cut(s)	98
Mph1103I	ATGCAT	2 cut(s)	200, 250
MroXI	GAANNNNTTC	1 cut(s)	638
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	3 cut(s)	60, 240, 856
MslI	CAYNNNNRTG	1 cut(s)	649
Msp20I	TGGCCA	1 cut(s)	98
MspI	CCGG	2 cut(s)	90, 128
MunI	CAATTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	437, 627, 815
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	6 cut(s)	187, 208, 393, 607, 712, 775
NlaIII	CATG	7 cut(s)	22, 252, 261, 287, 341, 625, 654
NlaIV	GGNNCC	1 cut(s)	758
NmuCI	GTSAC	3 cut(s)	377, 653, 827
NsiI	ATGCAT	2 cut(s)	200, 250
NspI	RCATGY	1 cut(s)	252
PaeR7I	CTCGAG	1 cut(s)	216
PagI	TCATGA	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	2 cut(s)	103, 111
PflMI	CCANNNNNTGG	2 cut(s)	158, 803
PkrI	GCNGC	3 cut(s)	345, 442, 795
PleI	GAGTC	2 cut(s)	80, 682
PpsI	GAGTC	2 cut(s)	80, 682
PspEI	GGTNACC	1 cut(s)	827
PspN4I	GGNNCC	1 cut(s)	758
PstI	CTGCAG	2 cut(s)	352, 470
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	3 cut(s)	371, 536, 843
RsaNI	GTAC	3 cut(s)	370, 535, 842
RseI	CAYNNNNRTG	1 cut(s)	649
SaqAI	TTAA	3 cut(s)	60, 240, 856
SatI	GCNGC	3 cut(s)	344, 441, 794
Sau3AI	GATC	6 cut(s)	187, 208, 393, 607, 712, 775
SchI	GAGTC	2 cut(s)	80, 682
SduI	GDGCHC	2 cut(s)	81, 759
SfaNI	GCATC	3 cut(s)	185, 235, 303
SfcI	CTRYAG	2 cut(s)	348, 466
Sfr274I	CTCGAG	1 cut(s)	216
SlaI	CTCGAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	649
SmlI	CTYRAG	2 cut(s)	216, 507
SmoI	CTYRAG	2 cut(s)	216, 507
Sse9I	AATT	6 cut(s)	180, 237, 388, 397, 575, 666
SsiI	CCGC	1 cut(s)	794
SspMI	CTAG	3 cut(s)	614, 692, 824
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	42, 136, 582
TaiI	ACGT	3 cut(s)	523, 567, 792
TaqI	TCGA	2 cut(s)	217, 392
TasI	AATT	6 cut(s)	180, 237, 388, 397, 575, 666
TatI	WGTACW	2 cut(s)	369, 534
TauI	GCSGC	1 cut(s)	796
TfiI	GAWTC	2 cut(s)	103, 111
Tru1I	TTAA	3 cut(s)	60, 240, 856
Tru9I	TTAA	3 cut(s)	60, 240, 856
TscAI	CASTG	3 cut(s)	415, 507, 804
TseFI	GTSAC	3 cut(s)	377, 653, 827
TseI	GCWGC	2 cut(s)	343, 440
Tsp45I	GTSAC	3 cut(s)	377, 653, 827
TspDTI	ATGAA	2 cut(s)	106, 326
TspRI	CASTG	3 cut(s)	415, 507, 804
Van91I	CCANNNNNTGG	2 cut(s)	158, 803
XagI	CCTNNNNNAGG	1 cut(s)	836
XapI	RAATTY	1 cut(s)	388
XceI	RCATGY	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	3 cut(s)	614, 692, 824
Zsp2I	ATGCAT	2 cut(s)	200, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.