Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000837

Physical Location & Seq

Genomic Coordinates Forward (+)

51873343 .. 51873876

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCAGATGCAGACTGCATTGCAGAAAAAGAAAAAGAATTGTGTGCGTTTGATGACCTCAAAATAGGTGTCAAAGGTCTTGCAGACTCCGGGGTCACCAAGATTCCCAGAATCTTCATCCACCCACCAGAGACTGTAAAGTACACAACACCAGAAAATGGTGTCAAACTTCAGATCCCAGTCATTGATCTCAAAGGCATGGGGAATGATCACAGTCTAGAGGAAATGGTCAATGCACTTAAAGATGCATGTGAAACATGGGGATTCTTTCAAATAGTTAACCATGGAGTTCCACTTGCTGCTATGGAGGAGATGCTTGATAGTATTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

110

Amino Acids

12.11

Weight (kDa)

4.72

Isoelectric Point (pI)

19.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	59 - 109	1.5e-14	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830 FvH4_2g21831 FvH4_2g21910
malus_domestica	MD05G1200300.v1.1 MD05G1205100.v1.1 MD10G1186700.v1.1 MD10G1187000.v1.1
prunus_persica	Prupe.8G226500_v2.0.a1 Prupe.8G226700_v2.0.a1 Prupe.8G226800_v2.0.a1
pyrus_communis	pycom05g18690 pycom05g18720 pycom05g19130 pycom10g16150 pycom10g16170
rosa_chinensis	RchiOBHm_Chr6g0288651 RchiOBHm_Chr6g0288661 RchiOBHm_Chr6g0288671 RchiOBHm_Chr6g0288701 RchiOBHm_Chr6g0288711 RchiOBHm_Chr6g0288761 RchiOBHm_Chr6g0310751
rosa_laevigata	RLG00000012367 RLG00000012370 RLG00000012375 RLG00000012379 RLG00000012382 RLG00000012383 RLG00000012384 RLG00000012386
rosa_multiflora	Rmu_co8507331.1_g000002 Rmu_sc0004688.1_g000011 Rmu_sc0004861.1_g000006 Rmu_sc0004861.1_g000009 Rmu_sc0008285.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179890 Rroxscaffold_7G00179930 Rroxscaffold_7G00179940 Rroxscaffold_7G00179950 Rroxscaffold_7G00179960
rosa_rugosa	Rorug06G0197500 Rorug06G0197600 Rorug06G0197600 Rorug06G0197700 Rorug06G0383000
rosa_samantha	Rh6AG309200 Rh6AG309300 Rh6AG309400 Rh6AG496800 Rh6BG314400 Rh6BG314500 Rh6BG314600 Rh6BG314700 Rh6BG314800 Rh6BG315300 Rh6CG321800 Rh6CG321900 Rh6CG322000 Rh6CG322800 Rh6DG307600 Rh6DG307700 Rh6DG307800 Rh6DG308500 Rh6DG498200
rosa_wichuraiana	Rw6G026700 Rw6G026710 Rw6G026740 Rw6G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	158
AclWI	GGATC	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	169
AlwNI	CAGNNNCTG	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	299
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	235, 303
BmuI	ACTGGG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	90, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	90, 283
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	174, 187, 208
Bsp19I	CCATGG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	90, 283
BssMI	GATC	3 cut(s)	174, 187, 208
BssT1I	CCWWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	136, 215
BstDSI	CCRYGG	1 cut(s)	283
BstEII	GGTNACC	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	3 cut(s)	177, 190, 211
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	174, 187, 208
BstNSI	RCATGY	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	4 cut(s)	199, 249, 258, 284
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	3 cut(s)	176, 189, 210
DpnII	GATC	3 cut(s)	174, 187, 208
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	155
Eco91I	GGTNACC	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	4 cut(s)	202, 252, 261, 287
FaiI	YATR	5 cut(s)	200, 250, 259, 285, 305
FatI	CATG	4 cut(s)	198, 248, 257, 283
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	300
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	4 cut(s)	202, 252, 261, 287
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	4 cut(s)	86, 103, 111, 264
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	144, 280
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	2 cut(s)	144, 280
HpyCH4III	ACNGT	2 cut(s)	136, 215
HpyCH4V	TGCA	6 cut(s)	11, 18, 23, 83, 236, 248
Hsp92II	CATG	4 cut(s)	202, 252, 261, 287
Ksp22I	TGATCA	1 cut(s)	208
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	174, 187, 208
LpnPI	CCDG	5 cut(s)	103, 121, 141, 165, 192
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	2 cut(s)	235, 303
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	3 cut(s)	176, 189, 210
MboI	GATC	3 cut(s)	174, 187, 208
MboII	GAAGA	1 cut(s)	106
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	3 cut(s)	68, 214, 301
Mph1103I	ATGCAT	1 cut(s)	250
MseI	TTAA	2 cut(s)	240, 279
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	91
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	3 cut(s)	174, 187, 208
NlaIII	CATG	4 cut(s)	202, 252, 261, 287
NmuCI	GTSAC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	250
NspI	RCATGY	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	103, 111, 264
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PspEI	GGTNACC	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	240, 279
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	3 cut(s)	174, 187, 208
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	3 cut(s)	60, 70, 79
SfaNI	GCATC	2 cut(s)	235, 303
Sse9I	AATT	1 cut(s)	38
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	136, 215
TasI	AATT	1 cut(s)	38
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	3 cut(s)	103, 111, 264
Tru1I	TTAA	2 cut(s)	240, 279
Tru9I	TTAA	2 cut(s)	240, 279
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	158
XbaI	TCTAGA	1 cut(s)	217
XceI	RCATGY	1 cut(s)	252
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.