Rmu_sc0008285.1_g000003

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008285.1
OG0000837
Physical Location & Seq
Forward (+)
8733 .. 10304
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008285.1_g000003.1.cds

Sequence Viewer

Length: 1062 bp
atggcagcagttgtggattgccatcagcatgagaaggagctcaaagcattcgatgaaagcaaagctggcgtcaaaggacttgcagacgctggggtgaccaagctcccaatcatgttcatacaccctccagagaatctactaaactcatcattccctgaagatgatgagcaatatcacaaaattcgcaaccttcaatttccggtgattgatcttagtggttttgataacagcgagaggcgaaaagaaatcgtcaatgacataaacaaagcagctgagtcatggggcttctttcagttggtgaaccatggaattccgcttaatgttacggaggggatccagaaaagtatccgagggtttcatgagctgccccaggaggagaaggtgaagtggtactcgcgcgattttacgcagaaggttaacttcttcagcaatggagacttgaaggtgtcgacgccagctgactggagggataccttgtcatgcaaggtcctagaagacccggaaagctttgaagcaataccgcaagagtgcaggcgagaagtaagtgagtatatgaaacacatcgatggagtgcaagagaagttatccgagttattttcagaagctttaggtcttagcagtgattatcttgcaagcacagggtgcttcaaatcgaggtcattggcgtgccactatttcccgatttgccctgaaccgcatttgactatgggcggaaccaagcattcggacctcggctttctcaccttgctccttcaagacagtgttggcggcctacaagttcttcatcaaaatgtttggattgatgttcccccagtgaagggagctctgctagcaaatattggtgacatgatgcagattattacaaatggcaagttcaagagtgtggagcatagagttttgatgaaaccaaccgccgagcctcgtgtctcaattgcatgtttcttgggtacggatgacctccaaaaaccatatggaccgataacagaacttatatcagaaaataatccgccaatttacagcgaagtcaaattcggagaatacatgaaaaagtataaactataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

353

Amino Acids

39.82

Weight (kDa)

5.51

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 449
AccII CGCG 2 cut(s) 397, 399
AciI CCGC 7 cut(s) 314, 521, 695, 711, 768, 912, 1007
AclWI GGATC 2 cut(s) 328, 341
AcsI RAATTY 3 cut(s) 180, 309, 1028
AcuI CTGAAG 2 cut(s) 177, 409
AcyI GRCGYC 2 cut(s) 69, 452
AdeI CACNNNGTG 1 cut(s) 642
AfaI GTAC 2 cut(s) 392, 949
AfiI CCNNNNNNNGG 2 cut(s) 817, 818
AgsI TTSAA 6 cut(s) 194, 442, 512, 649, 755, 877
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 9 cut(s) 40, 65, 103, 272, 364, 458, 507, 605, 824
AluI AGCT 9 cut(s) 40, 65, 103, 272, 364, 458, 507, 605, 824
Alw21I GWGCWC 2 cut(s) 42, 826
Alw26I GTCTC 2 cut(s) 429, 931
AlwI GGATC 2 cut(s) 328, 341
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 3 cut(s) 5, 269, 364
ApoI RAATTY 3 cut(s) 180, 309, 1028
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 3 cut(s) 487, 727, 974
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 6 cut(s) 106, 214, 310, 394, 733, 854
AsuNHI GCTAGC 1 cut(s) 829
AvaII GGWCC 3 cut(s) 487, 727, 974
BamHI GGATCC 1 cut(s) 333
BanII GRGCYC 2 cut(s) 42, 826
BauI CACGAG 1 cut(s) 921
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 2 cut(s) 42, 826
BbvI GCAGC 3 cut(s) 17, 281, 351
BccI CCATC 2 cut(s) 30, 560
BciT130I CCWGG 1 cut(s) 371
BciVI GTATCC 2 cut(s) 356, 463
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 2 cut(s) 429, 931
BfaI CTAG 2 cut(s) 491, 830
BfuI GTATCC 2 cut(s) 356, 463
BisI GCNGC 4 cut(s) 6, 270, 365, 769
BlsI GCNGC 4 cut(s) 7, 271, 366, 770
Bme1390I CCNGG 2 cut(s) 371, 500
Bme18I GGWCC 3 cut(s) 487, 727, 974
BmgT120I GGNCC 3 cut(s) 487, 727, 974
BmiI GGNNCC 2 cut(s) 335, 715
BmrFI CCNGG 2 cut(s) 371, 500
BmrI ACTGGG 1 cut(s) 806
BmsI GCATC 1 cut(s) 840
BmtI GCTAGC 1 cut(s) 833
BmuI ACTGGG 1 cut(s) 806
BpiI GAAGAC 1 cut(s) 501
BpmI CTGGAG 2 cut(s) 111, 484
BpuMI CCSGG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 564
BsaBI GATNNNNATC 1 cut(s) 21
BsaHI GRCGYC 2 cut(s) 69, 452
BsaJI CCNNGG 4 cut(s) 304, 349, 369, 730
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 2 cut(s) 817, 818
Bse1I ACTGG 2 cut(s) 467, 812
Bse3DI GCAATG 1 cut(s) 436
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 1 cut(s) 371
BseCI ATCGAT 1 cut(s) 564
BseDI CCNNGG 4 cut(s) 304, 349, 369, 730
BseGI GGATG 1 cut(s) 958
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 817, 818
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 2 cut(s) 467, 812
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 3 cut(s) 17, 281, 351
BseYI CCCAGC 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 550
Bsh1236I CGCG 2 cut(s) 397, 399
BshFI GGCC 1 cut(s) 771
BshVI ATCGAT 1 cut(s) 564
BsiHKAI GWGCWC 2 cut(s) 42, 826
BsiSI CCGG 2 cut(s) 200, 500
BslI CCNNNNNNNGG 2 cut(s) 817, 818
BsmAI GTCTC 2 cut(s) 429, 931
BsmI GAATGC 2 cut(s) 47, 721
BsnI GGCC 1 cut(s) 771
Bsp1286I GDGCHC 2 cut(s) 42, 826
Bsp143I GATC 2 cut(s) 208, 333
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 7 cut(s) 314, 521, 695, 711, 768, 912, 1007
BspANI GGCC 1 cut(s) 771
BspCNI CTCAG 1 cut(s) 265
BspDI ATCGAT 1 cut(s) 564
BspFNI CGCG 2 cut(s) 397, 399
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 335, 715
BspOI GCTAGC 1 cut(s) 833
BspPI GGATC 2 cut(s) 328, 341
BsrDI GCAATG 1 cut(s) 436
BsrI ACTGG 2 cut(s) 467, 812
BssECI CCNNGG 4 cut(s) 304, 349, 369, 730
BssMI GATC 2 cut(s) 208, 333
BssNI GRCGYC 2 cut(s) 69, 452
BssSI CACGAG 1 cut(s) 921
BssT1I CCWWGG 1 cut(s) 304
Bst2BI CACGAG 1 cut(s) 921
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 761
BstACI GRCGYC 2 cut(s) 69, 452
BstAPI GCANNNNNTGC 1 cut(s) 642
BstC8I GCNNGC 6 cut(s) 67, 456, 533, 634, 667, 831
BstDEI CTNAG 3 cut(s) 212, 273, 614
BstDSI CCRYGG 1 cut(s) 304
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 1 cut(s) 958
BstFNI CGCG 2 cut(s) 397, 399
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 2 cut(s) 211, 336
BstMAI GTCTC 2 cut(s) 429, 931
BstMBI GATC 2 cut(s) 208, 333
BstMWI GCNNNNNNNGC 3 cut(s) 66, 642, 830
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 1 cut(s) 939
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 369, 498
BstUI CGCG 2 cut(s) 397, 399
BstV1I GCAGC 3 cut(s) 17, 281, 351
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 333
BstXI CCANNNNNNTGG 1 cut(s) 462
BstYI RGATCY 1 cut(s) 333
Bsu15I ATCGAT 1 cut(s) 564
BsuI GTATCC 2 cut(s) 356, 463
BsuRI GGCC 1 cut(s) 771
BsuTUI ATCGAT 1 cut(s) 564
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 1 cut(s) 958
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 3 cut(s) 625, 766, 819
Cac8I GCNNGC 6 cut(s) 67, 456, 533, 634, 667, 831
CaiI CAGNNNCTG 1 cut(s) 89
CciI TCATGA 1 cut(s) 358
CfoI GCGC 1 cut(s) 399
Cfr13I GGNCC 3 cut(s) 487, 727, 974
ClaI ATCGAT 1 cut(s) 564
CseI GACGC 3 cut(s) 58, 95, 460
Csp6I GTAC 2 cut(s) 391, 948
CviAII CATG 9 cut(s) 29, 112, 279, 305, 359, 480, 847, 936, 1042
CviQI GTAC 2 cut(s) 391, 948
DdeI CTNAG 3 cut(s) 212, 273, 614
DpnI GATC 2 cut(s) 210, 335
DpnII GATC 2 cut(s) 208, 333
DraIII CACNNNGTG 1 cut(s) 642
EciI GGCGGA 2 cut(s) 726, 996
Ecl136II GAGCTC 2 cut(s) 40, 824
Eco130I CCWWGG 1 cut(s) 304
Eco24I GRGCYC 2 cut(s) 42, 826
Eco47I GGWCC 3 cut(s) 487, 727, 974
Eco53kI GAGCTC 2 cut(s) 40, 824
Eco57I CTGAAG 2 cut(s) 177, 409
Eco91I GGTNACC 1 cut(s) 94
EcoICRI GAGCTC 2 cut(s) 40, 824
EcoO109I RGGNCCY 1 cut(s) 487
EcoO65I GGTNACC 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 304
EcoT38I GRGCYC 2 cut(s) 42, 826
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 9 cut(s) 32, 115, 282, 308, 362, 483, 850, 939, 1045
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FatI CATG 9 cut(s) 28, 111, 278, 304, 358, 479, 846, 935, 1041
FauNDI CATATG 1 cut(s) 970
FblI GTMKAC 1 cut(s) 449
Fnu4HI GCNGC 4 cut(s) 6, 270, 365, 769
FokI GGATG 1 cut(s) 965
FriOI GRGCYC 2 cut(s) 42, 826
Fsp4HI GCNGC 4 cut(s) 6, 270, 365, 769
FspBI CTAG 2 cut(s) 491, 830
GlaI GCGC 1 cut(s) 398
GluI GCNGC 4 cut(s) 6, 270, 365, 769
GsaI CCCAGC 1 cut(s) 93
GsuI CTGGAG 2 cut(s) 111, 484
HaeIII GGCC 1 cut(s) 771
HapII CCGG 2 cut(s) 200, 500
HgaI GACGC 3 cut(s) 58, 95, 460
HhaI GCGC 1 cut(s) 399
Hin1I GRCGYC 2 cut(s) 69, 452
Hin1II CATG 9 cut(s) 32, 115, 282, 308, 362, 483, 850, 939, 1045
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 2 cut(s) 418, 450
HindII GTYRAC 2 cut(s) 418, 450
HindIII AAGCTT 2 cut(s) 505, 603
HinfI GANTC 2 cut(s) 133, 275
HpaI GTTAAC 1 cut(s) 418
HpaII CCGG 2 cut(s) 200, 500
HphI GGTGA 6 cut(s) 106, 214, 310, 394, 733, 854
Hpy166II GTNNAC 3 cut(s) 301, 418, 450
Hpy188I TCNGA 6 cut(s) 350, 589, 601, 727, 997, 1034
Hpy188III TCNNGA 6 cut(s) 128, 337, 359, 679, 755, 877
Hpy8I GTNNAC 3 cut(s) 301, 418, 450
Hpy99I CGWCG 1 cut(s) 454
HpyAV CCTTC 7 cut(s) 28, 200, 373, 406, 436, 761, 811
HpyCH4III ACNGT 1 cut(s) 761
HpyCH4V TGCA 7 cut(s) 83, 483, 531, 574, 632, 853, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 642, 830
HpyF3I CTNAG 3 cut(s) 212, 273, 614
Hsp92I GRCGYC 2 cut(s) 69, 452
Hsp92II CATG 9 cut(s) 32, 115, 282, 308, 362, 483, 850, 939, 1045
HspAI GCGC 1 cut(s) 397
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 2 cut(s) 208, 333
LmnI GCTCC 5 cut(s) 37, 108, 753, 821, 886
Lsp1109I GCAGC 3 cut(s) 17, 281, 351
LweI GCATC 1 cut(s) 840
MaeI CTAG 2 cut(s) 491, 830
MaeIII GTNAC 3 cut(s) 94, 322, 842
MalI GATC 2 cut(s) 210, 335
MboI GATC 2 cut(s) 208, 333
MboII GAAGA 4 cut(s) 170, 415, 506, 773
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 2 cut(s) 42, 826
MluCI AATT 6 cut(s) 180, 194, 309, 930, 1011, 1028
MlyI GAGTC 1 cut(s) 284
MseI TTAA 2 cut(s) 318, 417
MslI CAYNNNNRTG 4 cut(s) 27, 564, 664, 789
MspA1I CMGCKG 2 cut(s) 272, 458
MspI CCGG 2 cut(s) 200, 500
MspR9I CCNGG 2 cut(s) 371, 500
MunI CAATTG 1 cut(s) 930
Mva1269I GAATGC 2 cut(s) 47, 721
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 2 cut(s) 397, 399
MwoI GCNNNNNNNGC 3 cut(s) 66, 642, 830
NciI CCSGG 1 cut(s) 500
NcoI CCATGG 1 cut(s) 304
NdeI CATATG 1 cut(s) 970
NdeII GATC 2 cut(s) 208, 333
NheI GCTAGC 1 cut(s) 829
NlaIII CATG 9 cut(s) 32, 115, 282, 308, 362, 483, 850, 939, 1045
NlaIV GGNNCC 2 cut(s) 335, 715
NmeAIII GCCGAG 2 cut(s) 711, 940
NmuCI GTSAC 2 cut(s) 94, 842
NspI RCATGY 1 cut(s) 939
PagI TCATGA 1 cut(s) 358
PctI GAATGC 2 cut(s) 47, 721
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 4 cut(s) 7, 271, 366, 770
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 487
Psp124BI GAGCTC 2 cut(s) 42, 826
Psp5II RGGWCCY 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 369
PspEI GGTNACC 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 335, 715
PspPI GGNCC 3 cut(s) 487, 727, 974
PspPPI RGGWCCY 1 cut(s) 487
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 333
PvuII CAGCTG 2 cut(s) 272, 458
RsaI GTAC 2 cut(s) 392, 949
RsaNI GTAC 2 cut(s) 391, 948
RseI CAYNNNNRTG 4 cut(s) 27, 564, 664, 789
SacI GAGCTC 2 cut(s) 42, 826
SalI GTCGAC 1 cut(s) 448
SaqAI TTAA 2 cut(s) 318, 417
SatI GCNGC 4 cut(s) 6, 270, 365, 769
Sau3AI GATC 2 cut(s) 208, 333
Sau96I GGNCC 3 cut(s) 487, 727, 974
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 371, 500
SduI GDGCHC 2 cut(s) 42, 826
SfaNI GCATC 1 cut(s) 840
SinI GGWCC 3 cut(s) 487, 727, 974
SmiMI CAYNNNNRTG 4 cut(s) 27, 564, 664, 789
Sse9I AATT 6 cut(s) 180, 194, 309, 930, 1011, 1028
SsiI CCGC 7 cut(s) 314, 521, 695, 711, 768, 912, 1007
SspI AATATT 1 cut(s) 838
SspMI CTAG 2 cut(s) 491, 830
SstI GAGCTC 2 cut(s) 42, 826
StyD4I CCNGG 2 cut(s) 369, 498
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 761
TaqI TCGA 4 cut(s) 51, 449, 564, 653
TaqII GACCGA 1 cut(s) 991
TasI AATT 6 cut(s) 180, 194, 309, 930, 1011, 1028
TauI GCSGC 1 cut(s) 771
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 318, 417
Tru9I TTAA 2 cut(s) 318, 417
TscAI CASTG 3 cut(s) 625, 766, 819
TseFI GTSAC 2 cut(s) 94, 842
TseI GCWGC 3 cut(s) 5, 269, 364
Tsp45I GTSAC 2 cut(s) 94, 842
TspDTI ATGAA 7 cut(s) 69, 106, 347, 569, 773, 917, 1058
TspGWI ACGGA 2 cut(s) 341, 965
TspRI CASTG 3 cut(s) 625, 766, 819
VpaK11BI GGWCC 3 cut(s) 487, 727, 974
XapI RAATTY 3 cut(s) 180, 309, 1028
XceI RCATGY 1 cut(s) 939
XcmI CCANNNNNNNNNTGG 1 cut(s) 968
XmiI GTMKAC 1 cut(s) 449
XspI CTAG 2 cut(s) 491, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.