Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000837

Physical Location & Seq

Genomic Coordinates Forward (+)

50724217 .. 50725306

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG309200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAGGAGATGCTTCAAGGTATTCGTAGATTTCATGAGCAGCCTGCAGAAGACAAGATGGAGTTGTACTCTCGTGACTTCAAGAATTCGATCAATTTCTATTGCAGTGGAGATTTGAAAGTGCGTGCAAAATCAGCAGCAGATTGGAGAGACACCTTATCCTGCAGAGCCTTAGATAATAAATGGGACTTTGAAGCACTGCCTCAAGTGTGCAGACGTGAAATAAGTGAGTACATCAAAAACTTGATTGAACTTCAGAATGTGATATCCGAATTACTGTCGGAAGCATTAGGGCTTAGCAAGGATCACCTAGCACGCATGGGGTGCTTGAAAGCTTTCTCATTATCATGTCACTATTATCCAATTTGCCCCGAGCCTGAACTGACTCTAGGCACAATCAAACACTCAGATCCCTCATTTCTTACCTTAGTCCTGCAAGACGAGATTGGAGGGCTCCAAGTTCTCCATAAGGATCAATGGGTTGACGTGCCGCCAGTGGATGGAGCATTTGTAGCAAATCTAGGTGACCTTATGCAGCTCGTTACTAATAACAAGTTCAAGAGTGTGGAACATAGAGTGCTAGCTACCCCGCTTGTCAAGCCACGAATATCAGTTGCATCTTTCTTTGCTCCTATGGATAGCGACAAACGTGTCAAGTCGTACGGGCCTATAAAGGAGCTTCTATCTGAGAACAATCCCCCAATATACAGGGACACCCTTTACGGAGAATATACTGGGTATTACAGAGTTAATGGACAAAATGGCAGCTCTGCCCTGCCTAATTTCAGACTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

265

Amino Acids

30.19

Weight (kDa)

6.0

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	116 - 211	2.6e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830 FvH4_2g21831 FvH4_2g21910
malus_domestica	MD05G1200300.v1.1 MD05G1205100.v1.1 MD10G1186700.v1.1 MD10G1187000.v1.1
prunus_persica	Prupe.8G226500_v2.0.a1 Prupe.8G226700_v2.0.a1 Prupe.8G226800_v2.0.a1
pyrus_communis	pycom05g18690 pycom05g18720 pycom05g19130 pycom10g16150 pycom10g16170
rosa_chinensis	RchiOBHm_Chr6g0288651 RchiOBHm_Chr6g0288661 RchiOBHm_Chr6g0288671 RchiOBHm_Chr6g0288701 RchiOBHm_Chr6g0288711 RchiOBHm_Chr6g0288761 RchiOBHm_Chr6g0310751
rosa_laevigata	RLG00000012367 RLG00000012370 RLG00000012375 RLG00000012379 RLG00000012382 RLG00000012383 RLG00000012384 RLG00000012386
rosa_multiflora	Rmu_co8507331.1_g000002 Rmu_sc0004688.1_g000011 Rmu_sc0004861.1_g000006 Rmu_sc0004861.1_g000009 Rmu_sc0008285.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179890 Rroxscaffold_7G00179930 Rroxscaffold_7G00179940 Rroxscaffold_7G00179950 Rroxscaffold_7G00179960
rosa_rugosa	Rorug06G0197500 Rorug06G0197600 Rorug06G0197600 Rorug06G0197700 Rorug06G0383000
rosa_samantha	Rh6AG309200 Rh6AG309300 Rh6AG309400 Rh6AG496800 Rh6BG314400 Rh6BG314500 Rh6BG314600 Rh6BG314700 Rh6BG314800 Rh6BG315300 Rh6CG321800 Rh6CG321900 Rh6CG322000 Rh6CG322800 Rh6DG307600 Rh6DG307700 Rh6DG307800 Rh6DG308500 Rh6DG498200
rosa_wichuraiana	Rw6G026700 Rw6G026710 Rw6G026740 Rw6G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	650
AccB7I	CCANNNNNTGG	1 cut(s)	500
AciI	CCGC	2 cut(s)	491, 590
AclWI	GGATC	3 cut(s)	312, 404, 480
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	3 cut(s)	68, 233, 662
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflIII	ACRYGT	1 cut(s)	649
AgsI	TTSAA	7 cut(s)	17, 82, 118, 194, 251, 331, 559
AjiI	CACGTC	2 cut(s)	218, 487
AluBI	AGCT	5 cut(s)	335, 538, 584, 679, 768
AluI	AGCT	5 cut(s)	335, 538, 584, 679, 768
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	3 cut(s)	312, 404, 480
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	665
ApeKI	GCWGC	4 cut(s)	40, 137, 535, 765
ApoI	RAATTY	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	2 cut(s)	299, 536
AsuNHI	GCTAGC	1 cut(s)	580
AvaI	CYCGRG	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	4 cut(s)	52, 149, 547, 777
BccI	CCATC	2 cut(s)	52, 494
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	4 cut(s)	311, 389, 521, 581
BfmI	CTRYAG	2 cut(s)	45, 163
BisI	GCNGC	5 cut(s)	41, 138, 491, 536, 766
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	5 cut(s)	42, 139, 492, 537, 767
BmeT110I	CYCGRG	1 cut(s)	371
BmgBI	CACGTC	2 cut(s)	218, 487
BmgT120I	GGNCC	1 cut(s)	665
BmiI	GGNNCC	1 cut(s)	455
BmrI	ACTGGG	1 cut(s)	744
BmsI	GCATC	1 cut(s)	626
BmtI	GCTAGC	1 cut(s)	584
BmuI	ACTGGG	1 cut(s)	744
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
Bpu1102I	GCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	494, 739
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	2 cut(s)	420, 678
BseNI	ACTGG	2 cut(s)	494, 739
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	52, 149, 547, 777
BsgI	GTGCAG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	371
BsiWI	CGTACG	1 cut(s)	660
BslFI	GGGAC	2 cut(s)	200, 725
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	200, 725
BsnI	GGCC	1 cut(s)	667
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	4 cut(s)	90, 304, 409, 472
Bsp1720I	GCTNAGC	1 cut(s)	296
BspACI	CCGC	2 cut(s)	491, 590
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	2 cut(s)	419, 679
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	455
BspMAI	CTGCAG	2 cut(s)	49, 167
BspOI	GCTAGC	1 cut(s)	584
BspPI	GGATC	3 cut(s)	312, 404, 480
BsrI	ACTGG	2 cut(s)	494, 739
BssMI	GATC	4 cut(s)	90, 304, 409, 472
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	324
BstC8I	GCNNGC	4 cut(s)	45, 126, 316, 582
BstDEI	CTNAG	5 cut(s)	172, 296, 406, 427, 687
BstEII	GGTNACC	1 cut(s)	524
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	4 cut(s)	93, 307, 412, 475
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	4 cut(s)	90, 304, 409, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 324, 512, 598
BstPI	GGTNACC	1 cut(s)	524
BstSFI	CTRYAG	2 cut(s)	45, 163
BstV1I	GCAGC	4 cut(s)	52, 149, 547, 777
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	667
BtrI	CACGTC	2 cut(s)	218, 487
BtsCI	GGATG	1 cut(s)	505
BtsI	GCAGTG	2 cut(s)	112, 197
BtsIMutI	CAGTG	3 cut(s)	112, 197, 501
Cac8I	GCNNGC	4 cut(s)	45, 126, 316, 582
CciI	TCATGA	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	665
Csp6I	GTAC	3 cut(s)	67, 232, 661
CviAII	CATG	3 cut(s)	35, 319, 348
CviQI	GTAC	3 cut(s)	67, 232, 661
DdeI	CTNAG	5 cut(s)	172, 296, 406, 427, 687
DpnI	GATC	4 cut(s)	92, 306, 411, 474
DpnII	GATC	4 cut(s)	90, 304, 409, 472
DrdI	GACNNNNNNGTC	1 cut(s)	650
DseDI	GACNNNNNNGTC	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	524
EcoO65I	GGTNACC	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	85
EcoRV	GATATC	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	3 cut(s)	38, 322, 351
FaqI	GGGAC	2 cut(s)	200, 725
FatI	CATG	3 cut(s)	34, 318, 347
FauI	CCCGC	1 cut(s)	597
Fnu4HI	GCNGC	5 cut(s)	41, 138, 491, 536, 766
FokI	GGATG	1 cut(s)	512
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	5 cut(s)	41, 138, 491, 536, 766
FspBI	CTAG	4 cut(s)	311, 389, 521, 581
GluI	GCNGC	5 cut(s)	41, 138, 491, 536, 766
HaeIII	GGCC	1 cut(s)	667
Hin1II	CATG	3 cut(s)	38, 322, 351
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	1 cut(s)	385
HphI	GGTGA	2 cut(s)	299, 536
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	6 cut(s)	258, 271, 283, 409, 688, 788
Hpy188III	TCNNGA	4 cut(s)	35, 74, 82, 559
Hpy8I	GTNNAC	1 cut(s)	484
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	3 cut(s)	217, 486, 649
HpyCH4V	TGCA	9 cut(s)	47, 105, 128, 165, 213, 436, 535, 617, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 324, 512, 598
HpyF3I	CTNAG	5 cut(s)	172, 296, 406, 427, 687
HpySE526I	ACGT	3 cut(s)	217, 486, 649
Hsp92II	CATG	3 cut(s)	38, 322, 351
Kzo9I	GATC	4 cut(s)	90, 304, 409, 472
LmnI	GCTCC	4 cut(s)	459, 503, 634, 676
LpnPI	CCDG	8 cut(s)	57, 175, 390, 446, 507, 694, 720, 788
Lsp1109I	GCAGC	4 cut(s)	52, 149, 547, 777
LweI	GCATC	1 cut(s)	626
MaeI	CTAG	4 cut(s)	311, 389, 521, 581
MaeII	ACGT	3 cut(s)	217, 486, 649
MaeIII	GTNAC	4 cut(s)	74, 350, 524, 541
MalI	GATC	4 cut(s)	92, 306, 411, 474
MboI	GATC	4 cut(s)	90, 304, 409, 472
MboII	GAAGA	1 cut(s)	62
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	5 cut(s)	85, 94, 272, 363, 781
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	3 cut(s)	213, 424, 443
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	1 cut(s)	346
MwoI	GCNNNNNNNGC	4 cut(s)	134, 324, 512, 598
NdeII	GATC	4 cut(s)	90, 304, 409, 472
NheI	GCTAGC	1 cut(s)	580
NlaIII	CATG	3 cut(s)	38, 322, 351
NlaIV	GGNNCC	1 cut(s)	455
NmuCI	GTSAC	3 cut(s)	74, 350, 524
PagI	TCATGA	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	335
Pfl23II	CGTACG	1 cut(s)	660
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	5 cut(s)	42, 139, 492, 537, 767
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PspEI	GGTNACC	1 cut(s)	524
PspLI	CGTACG	1 cut(s)	660
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	1 cut(s)	665
PstI	CTGCAG	2 cut(s)	49, 167
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	3 cut(s)	68, 233, 662
RsaNI	GTAC	3 cut(s)	67, 232, 661
RseI	CAYNNNNRTG	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	5 cut(s)	41, 138, 491, 536, 766
Sau3AI	GATC	4 cut(s)	90, 304, 409, 472
Sau96I	GGNCC	1 cut(s)	665
SchI	GAGTC	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	626
SfcI	CTRYAG	2 cut(s)	45, 163
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	5 cut(s)	85, 94, 272, 363, 781
SsiI	CCGC	2 cut(s)	491, 590
SspMI	CTAG	4 cut(s)	311, 389, 521, 581
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	3 cut(s)	220, 489, 652
TaqI	TCGA	1 cut(s)	89
TasI	AATT	5 cut(s)	85, 94, 272, 363, 781
TatI	WGTACW	2 cut(s)	66, 231
TauI	GCSGC	1 cut(s)	493
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	3 cut(s)	112, 204, 501
TseFI	GTSAC	3 cut(s)	74, 350, 524
TseI	GCWGC	4 cut(s)	40, 137, 535, 765
Tsp45I	GTSAC	3 cut(s)	74, 350, 524
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	738
TspRI	CASTG	3 cut(s)	112, 204, 501
Van91I	CCANNNNNTGG	1 cut(s)	500
XapI	RAATTY	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	4 cut(s)	311, 389, 521, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.