RchiOBHm_Chr6g0288661

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000837
Physical Location & Seq
Reverse (-)
51861619 .. 51863386
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25898

Sequence Viewer

Length: 1128 bp
ATGAGGCAGCTACTCTCATCTTCAACTTGCAAACATGTTCTTGGTTTACAATCTAAACACCAAAATATGGCAGCAGTTGTGGATTGTGATCAGCGTGAGAAGGAGCTGAAAGCATTCGACGAAAGCAAAGCTGGCGTCAAAGGAATTGCAGACACTGGGGTGACCAAGCTCCCAACCATGTTCATACACCCTCCGGAGAATCTACTAAACTCGGCATTCCCAGAAGATGATGAGCAACATCACAAAATTCGCAACCTTCAAGTTCCGGTGATTGATCTCAGCGGTTTTGATAACAGCGAGAGGCGAAAAGAAATCGTCAATGACATAAACAAAGCAGCTGAGTCATGGGGCTTCTTTCAGTTGGTGAACCATGGAATTCCGCTTAATGTTATGGAGGGGATCCAGAAAAGTATCCGAGGGTTTCATGAGCTGCCCCAGGAGGAGAAGGTGAAGTGGTACTCGCGTGATTTTACGCAGAAGGTTAACTTCTTCAGCAATGGAGATTTGAAGGTGTCGACGCCAGCTGACTGGAGGGATACCTTGTCATGCAAGGTCCTGGAAGACCCAGAAAGCTTTGAAGCAATACCGCAAGTGTGCAGACGAGAAGTTAGTGAGTATATGAAACGCATCGATGGAGTGCAAGAGAAGTTATCCGAGTTATTTTCAGAAGCTTTAGGTCTCAATAGTGATTATCTTGCAAGCACAGGGTGCTTCAAATCGAGGTCACTGGCGTGCCACTATTTCCCGATTTGCCCTGAACCGCATTTGACTATGGGCGGAACCAAGCATTCGGACCTCTCGTTTCTCACCTTGCTCCTTCAAGACAGTGTTGGCGGCCTACAAGTTTTTCATCAAAATGTTTGGATTGATGTTCCCCCAGTGAAGGGAGCTTTGCTAGCAAATATTGCTGACATGATGCAGATCATTACAAATGGCAAGTTCAAAAGCGTGGAGCATAGAGTTTTGATGAAACCAACCGTCGAGCCTCGTATCTCAATTGCATGTTTTTTGGGTACGGATGACCTCCAAAAACCATACGGGCCGATAAAAGAACTTACATCGGAAAACAATCCACCGATTTATAGCGAAGTCAAATTCGGAGAATACATGAAAAAGTATAAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

375

Amino Acids

42.4

Weight (kDa)

6.08

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 88 - 188 3.1e-23 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 242 - 338 3e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 67
AccI GTMKAC 1 cut(s) 515
AccII CGCG 1 cut(s) 463
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 6 cut(s) 282, 380, 587, 761, 777, 834
AclWI GGATC 2 cut(s) 394, 407
AcsI RAATTY 3 cut(s) 246, 375, 1094
AcuI CTGAAG 1 cut(s) 475
AcyI GRCGYC 2 cut(s) 135, 518
AdeI CACNNNGTG 1 cut(s) 708
AfaI GTAC 2 cut(s) 458, 1015
AfiI CCNNNNNNNGG 3 cut(s) 67, 883, 884
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 7 cut(s) 24, 260, 508, 578, 715, 821, 943
AjnI CCWGG 2 cut(s) 435, 555
AleI CACNNNNGTG 2 cut(s) 158, 730
Alw26I GTCTC 1 cut(s) 683
AlwI GGATC 2 cut(s) 394, 407
AlwNI CAGNNNCTG 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 2 cut(s) 835, 1040
ApeKI GCWGC 4 cut(s) 7, 71, 335, 430
ApoI RAATTY 3 cut(s) 246, 375, 1094
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 1 cut(s) 113
AspS9I GGNCC 3 cut(s) 553, 793, 1040
AsuHPI GGTGA 5 cut(s) 172, 280, 376, 460, 799
AsuNHI GCTAGC 1 cut(s) 895
AvaII GGWCC 2 cut(s) 553, 793
BaeI ACNNNNGTAYC 2 cut(s) 448, 481
BamHI GGATCC 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 567
BbvI GCAGC 4 cut(s) 19, 83, 347, 417
BccI CCATC 1 cut(s) 626
BciT130I CCWGG 2 cut(s) 437, 557
BciVI GTATCC 2 cut(s) 422, 529
BclI TGATCA 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 683
BfaI CTAG 1 cut(s) 896
BfuI GTATCC 2 cut(s) 422, 529
BisI GCNGC 5 cut(s) 8, 72, 336, 431, 835
BlsI GCNGC 5 cut(s) 9, 73, 337, 432, 836
Bme1390I CCNGG 2 cut(s) 437, 557
Bme18I GGWCC 2 cut(s) 553, 793
BmgT120I GGNCC 3 cut(s) 553, 793, 1040
BmiI GGNNCC 2 cut(s) 401, 781
BmrFI CCNGG 2 cut(s) 437, 557
BmrI ACTGGG 2 cut(s) 165, 872
BmsI GCATC 2 cut(s) 636, 906
BmtI GCTAGC 1 cut(s) 899
BmuI ACTGGG 2 cut(s) 165, 872
BpiI GAAGAC 1 cut(s) 567
BpmI CTGGAG 1 cut(s) 550
Bsa29I ATCGAT 1 cut(s) 630
BsaBI GATNNNNATC 2 cut(s) 87, 920
BsaHI GRCGYC 2 cut(s) 135, 518
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 3 cut(s) 370, 415, 435
BsaWI WCCGGW 2 cut(s) 193, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 883, 884
Bse1I ACTGG 4 cut(s) 160, 533, 732, 878
Bse3DI GCAATG 1 cut(s) 502
Bse8I GATNNNNATC 2 cut(s) 87, 920
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 2 cut(s) 437, 557
BseCI ATCGAT 1 cut(s) 630
BseDI CCNNGG 3 cut(s) 370, 415, 435
BseGI GGATG 1 cut(s) 1024
BseJI GATNNNNATC 2 cut(s) 87, 920
BseLI CCNNNNNNNGG 3 cut(s) 67, 883, 884
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 292, 330
BseNI ACTGG 4 cut(s) 160, 533, 732, 878
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 4 cut(s) 19, 83, 347, 417
BsgI GTGCAG 1 cut(s) 616
Bsh1236I CGCG 1 cut(s) 463
BshFI GGCC 2 cut(s) 837, 1042
BshVI ATCGAT 1 cut(s) 630
BsiSI CCGG 2 cut(s) 194, 266
BslI CCNNNNNNNGG 3 cut(s) 67, 883, 884
BsmAI GTCTC 1 cut(s) 683
BsmI GAATGC 3 cut(s) 113, 215, 787
BsnI GGCC 2 cut(s) 837, 1042
Bso31I GGTCTC 1 cut(s) 683
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 4 cut(s) 88, 274, 399, 921
Bsp19I CCATGG 1 cut(s) 370
BspACI CCGC 6 cut(s) 282, 380, 587, 761, 777, 834
BspANI GGCC 2 cut(s) 837, 1042
BspCNI CTCAG 2 cut(s) 291, 331
BspDI ATCGAT 1 cut(s) 630
BspEI TCCGGA 1 cut(s) 193
BspFNI CGCG 1 cut(s) 463
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 401, 781
BspOI GCTAGC 1 cut(s) 899
BspPI GGATC 2 cut(s) 394, 407
BspTNI GGTCTC 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 4 cut(s) 160, 533, 732, 878
BssECI CCNNGG 3 cut(s) 370, 415, 435
BssMI GATC 4 cut(s) 88, 274, 399, 921
BssNI GRCGYC 2 cut(s) 135, 518
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 2 cut(s) 437, 557
Bst4CI ACNGT 2 cut(s) 827, 979
BstACI GRCGYC 2 cut(s) 135, 518
BstAPI GCANNNNNTGC 2 cut(s) 708, 905
BstC8I GCNNGC 5 cut(s) 133, 522, 700, 733, 897
BstDEI CTNAG 2 cut(s) 278, 339
BstDSI CCRYGG 1 cut(s) 370
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 1 cut(s) 1024
BstFNI CGCG 1 cut(s) 463
BstKTI GATC 4 cut(s) 91, 277, 402, 924
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 4 cut(s) 88, 274, 399, 921
BstMWI GCNNNNNNNGC 4 cut(s) 132, 708, 896, 905
BstNI CCWGG 2 cut(s) 437, 557
BstNSI RCATGY 2 cut(s) 38, 1005
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 435, 555
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 4 cut(s) 19, 83, 347, 417
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 1 cut(s) 399
BstXI CCANNNNNNTGG 1 cut(s) 528
BstYI RGATCY 1 cut(s) 399
Bsu15I ATCGAT 1 cut(s) 630
BsuI GTATCC 2 cut(s) 422, 529
BsuRI GGCC 2 cut(s) 837, 1042
BsuTUI ATCGAT 1 cut(s) 630
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 1 cut(s) 1024
BtsIMutI CAGTG 4 cut(s) 153, 725, 832, 885
Cac8I GCNNGC 5 cut(s) 133, 522, 700, 733, 897
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 1 cut(s) 424
Cfr13I GGNCC 3 cut(s) 553, 793, 1040
ClaI ATCGAT 1 cut(s) 630
CseI GACGC 2 cut(s) 124, 526
Csp6I GTAC 2 cut(s) 457, 1014
CviAII CATG 9 cut(s) 35, 178, 345, 371, 425, 546, 913, 1002, 1108
CviQI GTAC 2 cut(s) 457, 1014
DdeI CTNAG 2 cut(s) 278, 339
DpnI GATC 4 cut(s) 90, 276, 401, 923
DpnII GATC 4 cut(s) 88, 274, 399, 921
DraIII CACNNNGTG 1 cut(s) 708
EciI GGCGGA 1 cut(s) 792
Eco130I CCWWGG 1 cut(s) 370
Eco31I GGTCTC 1 cut(s) 683
Eco47I GGWCC 2 cut(s) 553, 793
Eco57I CTGAAG 1 cut(s) 475
Eco91I GGTNACC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 553
EcoO65I GGTNACC 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 435, 555
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 9 cut(s) 38, 181, 348, 374, 428, 549, 916, 1005, 1111
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FatI CATG 9 cut(s) 34, 177, 344, 370, 424, 545, 912, 1001, 1107
FbaI TGATCA 1 cut(s) 88
FblI GTMKAC 1 cut(s) 515
Fnu4HI GCNGC 5 cut(s) 8, 72, 336, 431, 835
FokI GGATG 1 cut(s) 1031
Fsp4HI GCNGC 5 cut(s) 8, 72, 336, 431, 835
FspBI CTAG 1 cut(s) 896
GluI GCNGC 5 cut(s) 8, 72, 336, 431, 835
GsuI CTGGAG 1 cut(s) 550
HaeIII GGCC 2 cut(s) 837, 1042
HapII CCGG 2 cut(s) 194, 266
HgaI GACGC 2 cut(s) 124, 526
Hin1I GRCGYC 2 cut(s) 135, 518
Hin1II CATG 9 cut(s) 38, 181, 348, 374, 428, 549, 916, 1005, 1111
HincII GTYRAC 2 cut(s) 484, 516
HindII GTYRAC 2 cut(s) 484, 516
HindIII AAGCTT 2 cut(s) 571, 669
HinfI GANTC 2 cut(s) 199, 341
HpaI GTTAAC 1 cut(s) 484
HpaII CCGG 2 cut(s) 194, 266
HphI GGTGA 5 cut(s) 172, 280, 376, 460, 799
Hpy166II GTNNAC 4 cut(s) 47, 367, 484, 516
Hpy188I TCNGA 6 cut(s) 416, 655, 667, 793, 1063, 1100
Hpy188III TCNNGA 5 cut(s) 194, 403, 425, 745, 821
Hpy8I GTNNAC 4 cut(s) 47, 367, 484, 516
Hpy99I CGWCG 3 cut(s) 122, 520, 983
HpyAV CCTTC 7 cut(s) 94, 266, 439, 472, 502, 827, 877
HpyCH4III ACNGT 2 cut(s) 827, 979
HpyCH4V TGCA 8 cut(s) 30, 149, 549, 597, 640, 698, 919, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 708, 896, 905
HpyF3I CTNAG 2 cut(s) 278, 339
Hsp92I GRCGYC 2 cut(s) 135, 518
Hsp92II CATG 9 cut(s) 38, 181, 348, 374, 428, 549, 916, 1005, 1111
Kpn2I TCCGGA 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 88
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 4 cut(s) 88, 274, 399, 921
LmnI GCTCC 5 cut(s) 103, 174, 819, 887, 952
Lsp1109I GCAGC 4 cut(s) 19, 83, 347, 417
LweI GCATC 2 cut(s) 636, 906
MaeI CTAG 1 cut(s) 896
MaeIII GTNAC 2 cut(s) 160, 723
MalI GATC 4 cut(s) 90, 276, 401, 923
MboI GATC 4 cut(s) 88, 274, 399, 921
MboII GAAGA 4 cut(s) 12, 236, 481, 572
MfeI CAATTG 1 cut(s) 996
MflI RGATCY 1 cut(s) 399
MluCI AATT 5 cut(s) 144, 246, 375, 996, 1094
MlyI GAGTC 1 cut(s) 350
MroI TCCGGA 1 cut(s) 193
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 2 cut(s) 384, 483
MslI CAYNNNNRTG 3 cut(s) 158, 730, 855
MspA1I CMGCKG 3 cut(s) 282, 338, 524
MspI CCGG 2 cut(s) 194, 266
MspR9I CCNGG 2 cut(s) 437, 557
MunI CAATTG 1 cut(s) 996
Mva1269I GAATGC 3 cut(s) 113, 215, 787
MvaI CCWGG 2 cut(s) 437, 557
MvnI CGCG 1 cut(s) 463
MwoI GCNNNNNNNGC 4 cut(s) 132, 708, 896, 905
NcoI CCATGG 1 cut(s) 370
NdeII GATC 4 cut(s) 88, 274, 399, 921
NheI GCTAGC 1 cut(s) 895
NlaIII CATG 9 cut(s) 38, 181, 348, 374, 428, 549, 916, 1005, 1111
NlaIV GGNNCC 2 cut(s) 401, 781
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 2 cut(s) 160, 723
NspI RCATGY 2 cut(s) 38, 1005
OliI CACNNNNGTG 2 cut(s) 158, 730
PagI TCATGA 1 cut(s) 424
PciI ACATGT 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 797
PctI GAATGC 3 cut(s) 113, 215, 787
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 555
PkrI GCNGC 5 cut(s) 9, 73, 337, 432, 836
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 553
PscI ACATGT 1 cut(s) 34
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 2 cut(s) 435, 555
PspEI GGTNACC 1 cut(s) 160
PspGI CCWGG 2 cut(s) 435, 555
PspN4I GGNNCC 2 cut(s) 401, 781
PspPI GGNCC 3 cut(s) 553, 793, 1040
PspPPI RGGWCCY 1 cut(s) 553
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 399
PvuII CAGCTG 2 cut(s) 338, 524
RsaI GTAC 2 cut(s) 458, 1015
RsaNI GTAC 2 cut(s) 457, 1014
RseI CAYNNNNRTG 3 cut(s) 158, 730, 855
SalI GTCGAC 1 cut(s) 514
SaqAI TTAA 2 cut(s) 384, 483
SatI GCNGC 5 cut(s) 8, 72, 336, 431, 835
Sau3AI GATC 4 cut(s) 88, 274, 399, 921
Sau96I GGNCC 3 cut(s) 553, 793, 1040
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 437, 557
SfaNI GCATC 2 cut(s) 636, 906
SinI GGWCC 2 cut(s) 553, 793
SmiMI CAYNNNNRTG 3 cut(s) 158, 730, 855
Sse9I AATT 5 cut(s) 144, 246, 375, 996, 1094
SsiI CCGC 6 cut(s) 282, 380, 587, 761, 777, 834
SspI AATATT 1 cut(s) 904
SspMI CTAG 1 cut(s) 896
StyD4I CCNGG 2 cut(s) 435, 555
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 827, 979
TaqI TCGA 5 cut(s) 117, 515, 630, 719, 981
TasI AATT 5 cut(s) 144, 246, 375, 996, 1094
TauI GCSGC 1 cut(s) 837
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 2 cut(s) 384, 483
Tru9I TTAA 2 cut(s) 384, 483
TscAI CASTG 4 cut(s) 160, 732, 832, 885
TseFI GTSAC 2 cut(s) 160, 723
TseI GCWGC 4 cut(s) 7, 71, 335, 430
Tsp45I GTSAC 2 cut(s) 160, 723
TspDTI ATGAA 6 cut(s) 172, 413, 635, 839, 983, 1124
TspGWI ACGGA 1 cut(s) 1031
TspRI CASTG 4 cut(s) 160, 732, 832, 885
Van91I CCANNNNNTGG 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 553, 793
XapI RAATTY 3 cut(s) 246, 375, 1094
XceI RCATGY 2 cut(s) 38, 1005
XmiI GTMKAC 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.