Rh6DG307600

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000837
Physical Location & Seq
Forward (+)
50840751 .. 50841371
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG307600.1

Sequence Viewer

Length: 276 bp
ATGGAGGAGATGCTTCAAGGAATTTGTAGATTTCATGAGCAGCCTGCAGAAGACAAGATGGAGTTGTACTCTCGTGACTTCAAGAATCCGGTCAACTTTTATTGCAGTGGAGATCTGAAAGTGCGTACAAAATCAGCAGTAGACTGGAGAGACACCTTATTCTGCAGAGAAGTAGATGATGAATGGGATTTTGAAGCACTGCCTCAAGTCTGCAGGACGAGATTGGGGGCCTCCAAGTTCTCCATAAAGATCAATTGGTTGATGTGCCACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

91

Amino Acids

10.88

Weight (kDa)

5.32

Isoelectric Point (pI)

25.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AcsI RAATTY 1 cut(s) 21
AfaI GTAC 2 cut(s) 68, 127
AgsI TTSAA 3 cut(s) 17, 82, 194
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 228
BauI CACGAG 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 144
BfmI CTRYAG 3 cut(s) 45, 163, 211
BglII AGATCT 1 cut(s) 112
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 57
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 88
Bse1I ACTGG 2 cut(s) 149, 271
BseNI ACTGG 2 cut(s) 149, 271
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 52
BshFI GGCC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 230
Bsp143I GATC 2 cut(s) 112, 249
BspANI GGCC 1 cut(s) 230
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 229
BspMAI CTGCAG 3 cut(s) 49, 167, 215
BsrI ACTGG 2 cut(s) 149, 271
BssMI GATC 2 cut(s) 112, 249
BssSI CACGAG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 45
BstKTI GATC 2 cut(s) 115, 252
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 112, 249
BstSFI CTRYAG 3 cut(s) 45, 163, 211
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 230
BtsI GCAGTG 2 cut(s) 112, 197
BtsIMutI CAGTG 2 cut(s) 112, 197
Cac8I GCNNGC 1 cut(s) 45
CciI TCATGA 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 228
Csp6I GTAC 2 cut(s) 67, 126
CviAII CATG 1 cut(s) 35
CviJI RGCY 2 cut(s) 43, 230
CviKI_1 RGCY 2 cut(s) 43, 230
CviQI GTAC 2 cut(s) 67, 126
DpnI GATC 2 cut(s) 114, 251
DpnII GATC 2 cut(s) 112, 249
EcoO109I RGGNCCY 1 cut(s) 228
FaeI CATG 1 cut(s) 38
FaiI YATR 2 cut(s) 36, 245
FatI CATG 1 cut(s) 34
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 89
Hin1II CATG 1 cut(s) 38
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 94, 142
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 3 cut(s) 35, 74, 82
Hpy8I GTNNAC 2 cut(s) 94, 142
HpyCH4V TGCA 4 cut(s) 47, 105, 165, 213
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 2 cut(s) 112, 249
LpnPI CCDG 4 cut(s) 57, 102, 130, 199
Lsp1109I GCAGC 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 74
MalI GATC 2 cut(s) 114, 251
MboI GATC 2 cut(s) 112, 249
MboII GAAGA 1 cut(s) 62
MfeI CAATTG 1 cut(s) 253
MflI RGATCY 1 cut(s) 112
MluCI AATT 2 cut(s) 21, 253
MnlI CCTC 2 cut(s) 213, 241
MspI CCGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 253
NdeII GATC 2 cut(s) 112, 249
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 74
PagI TCATGA 1 cut(s) 34
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 1 cut(s) 228
PstI CTGCAG 3 cut(s) 49, 167, 215
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 2 cut(s) 68, 127
RsaNI GTAC 2 cut(s) 67, 126
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 112, 249
Sau96I GGNCC 1 cut(s) 228
SetI ASST 1 cut(s) 158
SfcI CTRYAG 3 cut(s) 45, 163, 211
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 2 cut(s) 21, 253
TasI AATT 2 cut(s) 21, 253
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 1 cut(s) 85
TscAI CASTG 2 cut(s) 112, 204
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 23, 195
TspRI CASTG 2 cut(s) 112, 204
XapI RAATTY 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.