Prupe.8G226500_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000837
Physical Location & Seq
Reverse (-)
20305437 .. 20307444
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G226500.1

Sequence Viewer

Length: 1116 bp
ATGGCACCAGCACTTGTCGATTACACCGCCGCTGAAAAAGAATTGTACGAATTTGATGACCTCAAAATCGGTGTCAAAGGCCTCGTGGATGCTGGGGTGACCCACATTCCCAGGTGCTTCATCCACCCACCGGAGTGTCGTGCAAACAACTCATCAACTCCGCAGAACAACGGGGCTGATGGAGTTGAAATCCCCGTCATCAATCTCCAAGGGTTTAACGAGAACGATGACCGGCGAGTAAAGATGGTCAATGCCATGAGATATGCATGCGCTACGTGGGGTTTCTTTCAGATAGTTAACCATGGAGTTCCAGTTGCTGTAATGGTGGAGATGGTGGAAAGTATAAGAAGGTTCCATGAGCAGCCCCAGGAGGCCAAGATGGAGTGGTACTCACGTGACTTTAGTCGCACGGTGAATTATTATAGCAGTGGAGATATCAAAGGGCGTGCACAACCAGTACCAGCTGAATGGAAGGACACTTTGTCCTGCAGAGCTGCAGATGATCAGTGGGATTTTGATGCACTTCCTGAACTGTGCAGGCGCGAAATGAAGGAGTACATGAAAAACATGATTGACCTGCAGGAAAAGCTATCTGAATTAATGTCAGAAGCGTTGGGGCTCAATAAGGATCACCTATCCAGCACCGGGTACTTGAAGTCTATCAAGTTATCGGGTCACTATTACCCTGCTTGCCCTGAGCCCGATTTGACTCTAGGCACAATCAAACACTCGGACCCCTCCCTCCTCACCTTAGTCCTACAAGACAAGAGCAATGGCCTCCAAGTTCTCCATAATGATCAATGGGTTGATATTCCAGCGGTGGAAGGAGCTTTTGTTGCGAACATTGGTGACTTTATGCAGTTGCTTAGTAATGACAAGTTCAAGAGCGTGGAGCACAGAGTATTGGCTACCCCGTTTGGCAAGCCAAGAATATCAGCTGTATCTTTTTTCCTTCCTTGTGCTAAGGACATACATAAGCCATGCGGACCAATCAAGGAGCTTTTGTCCGATAACAGTCCCCCCATATACAGGATCACCTCTTATGCTGAGTTTATGAGCCATTACAGAGTTGTTGGGCAAATTGGCGGTCGTGCCTTGCCTCACTTTAAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

372

Amino Acids

41.78

Weight (kDa)

5.86

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 585
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 543
AciI CCGC 6 cut(s) 27, 30, 161, 818, 984, 1086
AclWI GGATC 2 cut(s) 636, 1040
AcsI RAATTY 1 cut(s) 50
AcvI CACGTG 1 cut(s) 395
AfaI GTAC 5 cut(s) 47, 389, 459, 557, 650
AfiI CCNNNNNNNGG 3 cut(s) 130, 645, 1029
AgsI TTSAA 3 cut(s) 188, 655, 883
AhdI GACNNNNNGTC 1 cut(s) 481
AjnI CCWGG 2 cut(s) 110, 366
AleI CACNNNNGTG 1 cut(s) 133
AluBI AGCT 6 cut(s) 464, 494, 589, 830, 938, 1000
AluI AGCT 6 cut(s) 464, 494, 589, 830, 938, 1000
Alw21I GWGCWC 2 cut(s) 451, 897
Alw44I GTGCAC 1 cut(s) 447
AlwI GGATC 2 cut(s) 636, 1040
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 3 cut(s) 79, 372, 775
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 2 cut(s) 361, 494
ApoI RAATTY 1 cut(s) 50
ArsI GACNNNNNNTTYG 4 cut(s) 57, 89, 1072, 1104
AseI ATTAAT 1 cut(s) 599
AspLEI GCGC 2 cut(s) 272, 543
AspS9I GGNCC 2 cut(s) 733, 986
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 6 cut(s) 109, 424, 623, 739, 860, 1027
AvaII GGWCC 2 cut(s) 733, 986
BaeGI GKGCMC 1 cut(s) 451
BaeI ACNNNNGTAYC 2 cut(s) 379, 412
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 621, 702
BauI CACGAG 1 cut(s) 83
BbrPI CACGTG 1 cut(s) 395
Bbv12I GWGCWC 2 cut(s) 451, 897
BbvI GCAGC 2 cut(s) 373, 481
BccI CCATC 4 cut(s) 173, 238, 325, 373
BciT130I CCWGG 2 cut(s) 112, 368
BclI TGATCA 2 cut(s) 502, 796
BcnI CCSGG 1 cut(s) 646
BfaI CTAG 1 cut(s) 713
BfmI CTRYAG 3 cut(s) 487, 495, 578
BfuAI ACCTGC 1 cut(s) 585
BisI GCNGC 3 cut(s) 30, 362, 495
BlsI GCNGC 3 cut(s) 31, 363, 496
Bme1390I CCNGG 3 cut(s) 112, 368, 646
Bme18I GGWCC 2 cut(s) 733, 986
BmeRI GACNNNNNGTC 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 733, 986
BmiI GGNNCC 3 cut(s) 6, 353, 735
BmrFI CCNGG 3 cut(s) 112, 368, 646
BmsI GCATC 2 cut(s) 79, 508
BoxI GACNNNNGTC 1 cut(s) 402
BplI GAGNNNNNCTC 2 cut(s) 374, 406
Bpu10I CCTNAGC 2 cut(s) 696, 963
BpuMI CCSGG 1 cut(s) 646
BsaAI YACGTR 2 cut(s) 276, 395
BsaJI CCNNGG 4 cut(s) 110, 208, 301, 366
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 6 cut(s) 297, 327, 819, 849, 989, 1019
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 645, 1029
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 2 cut(s) 311, 455
Bse3DI GCAATG 1 cut(s) 778
BseBI CCWGG 2 cut(s) 112, 368
BseDI CCNNGG 4 cut(s) 110, 208, 301, 366
BseGI GGATG 2 cut(s) 94, 120
BseLI CCNNNNNNNGG 3 cut(s) 130, 645, 1029
BseMI GCAATG 1 cut(s) 778
BseMII CTCAG 2 cut(s) 687, 1038
BseNI ACTGG 2 cut(s) 311, 455
BseRI GAGGAG 1 cut(s) 734
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 2 cut(s) 373, 481
BseYI CCCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 556
Bsh1236I CGCG 1 cut(s) 543
Bsh1285I CGRYCG 1 cut(s) 1090
BshFI GGCC 3 cut(s) 81, 374, 777
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 1090
BsiHKAI GWGCWC 2 cut(s) 451, 897
BsiSI CCGG 3 cut(s) 131, 232, 645
BslFI GGGAC 1 cut(s) 1002
BslI CCNNNNNNNGG 3 cut(s) 130, 645, 1029
BsmFI GGGAC 1 cut(s) 1002
BsnI GGCC 3 cut(s) 81, 374, 777
Bsp1286I GDGCHC 4 cut(s) 451, 621, 702, 897
Bsp143I GATC 4 cut(s) 502, 628, 796, 1032
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 6 cut(s) 27, 30, 161, 818, 984, 1086
BspANI GGCC 3 cut(s) 81, 374, 777
BspCNI CTCAG 2 cut(s) 688, 1039
BspFNI CGCG 1 cut(s) 543
BspLI GGNNCC 3 cut(s) 6, 353, 735
BspMAI CTGCAG 3 cut(s) 491, 499, 582
BspMI ACCTGC 1 cut(s) 585
BspPI GGATC 2 cut(s) 636, 1040
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 778
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 2 cut(s) 311, 455
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 4 cut(s) 110, 208, 301, 366
BssMI GATC 4 cut(s) 502, 628, 796, 1032
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 2 cut(s) 208, 301
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 112, 368
Bst4CI ACNGT 3 cut(s) 412, 534, 1016
BstBAI YACGTR 2 cut(s) 276, 395
BstC8I GCNNGC 5 cut(s) 268, 447, 539, 691, 923
BstDEI CTNAG 5 cut(s) 696, 751, 866, 963, 1047
BstDSI CCRYGG 1 cut(s) 301
BstEII GGTNACC 1 cut(s) 97
BstF5I GGATG 2 cut(s) 94, 120
BstFNI CGCG 1 cut(s) 543
BstHHI GCGC 2 cut(s) 272, 543
BstKTI GATC 4 cut(s) 505, 631, 799, 1035
BstMBI GATC 4 cut(s) 502, 628, 796, 1032
BstMCI CGRYCG 1 cut(s) 1090
BstMWI GCNNNNNNNGC 2 cut(s) 586, 836
BstNI CCWGG 2 cut(s) 112, 368
BstNSI RCATGY 1 cut(s) 270
BstPAI GACNNNNGTC 1 cut(s) 402
BstPI GGTNACC 1 cut(s) 97
BstSCI CCNGG 3 cut(s) 110, 366, 644
BstSFI CTRYAG 3 cut(s) 487, 495, 578
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 1 cut(s) 543
BstV1I GCAGC 2 cut(s) 373, 481
BstXI CCANNNNNNTGG 1 cut(s) 468
BsuRI GGCC 3 cut(s) 81, 374, 777
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 2 cut(s) 94, 120
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 2 cut(s) 433, 512
BveI ACCTGC 1 cut(s) 585
Cac8I GCNNGC 5 cut(s) 268, 447, 539, 691, 923
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 2 cut(s) 272, 543
Cfr10I RCCGGY 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 733, 986
Csp6I GTAC 5 cut(s) 46, 388, 458, 556, 649
CviAII CATG 7 cut(s) 256, 267, 302, 356, 559, 568, 981
CviQI GTAC 5 cut(s) 46, 388, 458, 556, 649
DdeI CTNAG 5 cut(s) 696, 751, 866, 963, 1047
DpnI GATC 4 cut(s) 504, 630, 798, 1034
DpnII GATC 4 cut(s) 502, 628, 796, 1032
DraI TTTAAA 1 cut(s) 1108
DriI GACNNNNNGTC 1 cut(s) 481
Eam1105I GACNNNNNGTC 1 cut(s) 481
Eco130I CCWWGG 2 cut(s) 208, 301
Eco147I AGGCCT 1 cut(s) 81
Eco24I GRGCYC 2 cut(s) 621, 702
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 733, 986
Eco72I CACGTG 1 cut(s) 395
Eco91I GGTNACC 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 110, 366
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 2 cut(s) 208, 301
EcoT22I ATGCAT 1 cut(s) 268
EcoT38I GRGCYC 2 cut(s) 621, 702
ErhI CCWWGG 2 cut(s) 208, 301
FaeI CATG 7 cut(s) 259, 270, 305, 359, 562, 571, 984
FaqI GGGAC 1 cut(s) 1002
FatI CATG 7 cut(s) 255, 266, 301, 355, 558, 567, 980
FbaI TGATCA 2 cut(s) 502, 796
Fnu4HI GCNGC 3 cut(s) 30, 362, 495
FokI GGATG 2 cut(s) 101, 107
FriOI GRGCYC 2 cut(s) 621, 702
Fsp4HI GCNGC 3 cut(s) 30, 362, 495
FspBI CTAG 1 cut(s) 713
GlaI GCGC 2 cut(s) 271, 542
GluI GCNGC 3 cut(s) 30, 362, 495
GsaI CCCAGC 1 cut(s) 96
HaeIII GGCC 3 cut(s) 81, 374, 777
HapII CCGG 3 cut(s) 131, 232, 645
HhaI GCGC 2 cut(s) 272, 543
Hin1II CATG 7 cut(s) 259, 270, 305, 359, 562, 571, 984
Hin6I GCGC 2 cut(s) 270, 541
HinP1I GCGC 2 cut(s) 270, 541
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 1 cut(s) 709
HpaI GTTAAC 1 cut(s) 298
HpaII CCGG 3 cut(s) 131, 232, 645
HphI GGTGA 6 cut(s) 109, 424, 623, 739, 860, 1027
Hpy166II GTNNAC 2 cut(s) 298, 449
Hpy188I TCNGA 5 cut(s) 291, 595, 607, 733, 1009
Hpy188III TCNNGA 2 cut(s) 527, 883
Hpy8I GTNNAC 2 cut(s) 298, 449
HpyAV CCTTC 5 cut(s) 342, 466, 544, 818, 962
HpyCH4III ACNGT 3 cut(s) 412, 534, 1016
HpyCH4IV ACGT 2 cut(s) 275, 394
HpyCH4V TGCA 9 cut(s) 143, 266, 449, 489, 497, 521, 537, 580, 859
HpyF10VI GCNNNNNNNGC 2 cut(s) 586, 836
HpyF3I CTNAG 5 cut(s) 696, 751, 866, 963, 1047
HpySE526I ACGT 2 cut(s) 275, 394
Hsp92II CATG 7 cut(s) 259, 270, 305, 359, 562, 571, 984
HspAI GCGC 2 cut(s) 270, 541
Ksp22I TGATCA 2 cut(s) 502, 796
KspAI GTTAAC 1 cut(s) 298
Kzo9I GATC 4 cut(s) 502, 628, 796, 1032
LmnI GCTCC 3 cut(s) 827, 892, 997
Lsp1109I GCAGC 2 cut(s) 373, 481
LweI GCATC 2 cut(s) 79, 508
MaeI CTAG 1 cut(s) 713
MaeII ACGT 2 cut(s) 275, 394
MaeIII GTNAC 4 cut(s) 97, 395, 674, 848
MalI GATC 4 cut(s) 504, 630, 798, 1034
MboI GATC 4 cut(s) 502, 628, 796, 1032
MhlI GDGCHC 4 cut(s) 451, 621, 702, 897
MluCI AATT 5 cut(s) 41, 50, 415, 596, 1080
MlyI GAGTC 1 cut(s) 703
MnlI CCTC 9 cut(s) 71, 92, 364, 748, 752, 755, 788, 1048, 1110
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 4 cut(s) 216, 297, 599, 1107
MslI CAYNNNNRTG 1 cut(s) 133
MspA1I CMGCKG 4 cut(s) 32, 464, 818, 938
MspI CCGG 3 cut(s) 131, 232, 645
MspR9I CCNGG 3 cut(s) 112, 368, 646
MvaI CCWGG 2 cut(s) 112, 368
MvnI CGCG 1 cut(s) 543
MwoI GCNNNNNNNGC 2 cut(s) 586, 836
NciI CCSGG 1 cut(s) 646
NcoI CCATGG 1 cut(s) 301
NdeII GATC 4 cut(s) 502, 628, 796, 1032
NlaIII CATG 7 cut(s) 259, 270, 305, 359, 562, 571, 984
NlaIV GGNNCC 3 cut(s) 6, 353, 735
NmuCI GTSAC 4 cut(s) 97, 395, 674, 848
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 1 cut(s) 270
OliI CACNNNNGTG 1 cut(s) 133
PaeI GCATGC 1 cut(s) 270
PceI AGGCCT 1 cut(s) 81
PkrI GCNGC 3 cut(s) 31, 363, 496
PleI GAGTC 1 cut(s) 703
PmaCI CACGTG 1 cut(s) 395
PmlI CACGTG 1 cut(s) 395
PpsI GAGTC 1 cut(s) 703
Ppu21I YACGTR 2 cut(s) 276, 395
PshAI GACNNNNGTC 1 cut(s) 402
PshBI ATTAAT 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 110, 366
PspCI CACGTG 1 cut(s) 395
PspEI GGTNACC 1 cut(s) 97
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 2 cut(s) 110, 366
PspN4I GGNNCC 3 cut(s) 6, 353, 735
PspPI GGNCC 2 cut(s) 733, 986
PstI CTGCAG 3 cut(s) 491, 499, 582
PstNI CAGNNNCTG 1 cut(s) 317
PvuII CAGCTG 2 cut(s) 464, 938
RsaI GTAC 5 cut(s) 47, 389, 459, 557, 650
RsaNI GTAC 5 cut(s) 46, 388, 458, 556, 649
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 4 cut(s) 216, 297, 599, 1107
SatI GCNGC 3 cut(s) 30, 362, 495
Sau3AI GATC 4 cut(s) 502, 628, 796, 1032
Sau96I GGNCC 2 cut(s) 733, 986
SbfI CCTGCAGG 1 cut(s) 582
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 3 cut(s) 112, 368, 646
SdaI CCTGCAGG 1 cut(s) 582
SduI GDGCHC 4 cut(s) 451, 621, 702, 897
SfaNI GCATC 2 cut(s) 79, 508
SfcI CTRYAG 3 cut(s) 487, 495, 578
SinI GGWCC 2 cut(s) 733, 986
SmiMI CAYNNNNRTG 1 cut(s) 133
SphI GCATGC 1 cut(s) 270
Sse8387I CCTGCAGG 1 cut(s) 582
Sse9I AATT 5 cut(s) 41, 50, 415, 596, 1080
SseBI AGGCCT 1 cut(s) 81
SsiI CCGC 6 cut(s) 27, 30, 161, 818, 984, 1086
SspMI CTAG 1 cut(s) 713
StuI AGGCCT 1 cut(s) 81
StyD4I CCNGG 3 cut(s) 110, 366, 644
StyI CCWWGG 2 cut(s) 208, 301
TaaI ACNGT 3 cut(s) 412, 534, 1016
TaiI ACGT 2 cut(s) 278, 397
TaqI TCGA 1 cut(s) 18
TasI AATT 5 cut(s) 41, 50, 415, 596, 1080
TatI WGTACW 1 cut(s) 555
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 4 cut(s) 216, 297, 599, 1107
Tru9I TTAA 4 cut(s) 216, 297, 599, 1107
TscAI CASTG 2 cut(s) 433, 512
TseFI GTSAC 4 cut(s) 97, 395, 674, 848
TseI GCWGC 2 cut(s) 361, 494
Tsp45I GTSAC 4 cut(s) 97, 395, 674, 848
TspDTI ATGAA 3 cut(s) 109, 563, 575
TspRI CASTG 2 cut(s) 433, 512
VneI GTGCAC 1 cut(s) 447
VpaK11BI GGWCC 2 cut(s) 733, 986
VspI ATTAAT 1 cut(s) 599
XapI RAATTY 1 cut(s) 50
XceI RCATGY 1 cut(s) 270
XspI CTAG 1 cut(s) 713
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.