Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000837

Physical Location & Seq

Genomic Coordinates Reverse (-)

19429417 .. 19430740

Gene Structure 1324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTGTTGGTCAAGTTGGGAATCTCTCCCAAAGATCTGTTGCAGCGCTAGCACTGCTGCATGGTCTCAGGTTTAAAATTCATGACAGTTTCGTTAACCATGGAGTTCCACTTGCTGTTATGGAGGAGATGCTTGAAGGTATTCGTAGATTTCACGAGCAGCCTGCAGAAGACAAGATGGAGTTTTACTCTCGTGACTTCAAGAATTCAGTCAACTTTTATTGCAGTGGAGATCTGAAATTGCGTGCAAAATCAGCAGCAAATTGGAGAGACACCTCATCTTGCAGAGCCGTAGATGATAAATGGGACTTTGAAGCACTGCCTATACGTGAAATAAGTGAGTATATTAAAAACTTAATTGAACTTCAAAATGTGCTATCCGAATTACCATTGGAAGCATTAGGGCTTAGCAAGGATCAACTAGCACGCATGGGGTGCTCGAAAGCTTTCTCATTGTCATGCCACTATTATCCAGACAAGGCCAGGGACAGATCAGTAGTTCTTAGAGTGAAGTTCAATGACATCCTCTTAAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

179

Amino Acids

20.46

Weight (kDa)

7.69

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	32 - 96	8.5e-07	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830 FvH4_2g21831 FvH4_2g21910
malus_domestica	MD05G1200300.v1.1 MD05G1205100.v1.1 MD10G1186700.v1.1 MD10G1187000.v1.1
prunus_persica	Prupe.8G226500_v2.0.a1 Prupe.8G226700_v2.0.a1 Prupe.8G226800_v2.0.a1
pyrus_communis	pycom05g18690 pycom05g18720 pycom05g19130 pycom10g16150 pycom10g16170
rosa_chinensis	RchiOBHm_Chr6g0288651 RchiOBHm_Chr6g0288661 RchiOBHm_Chr6g0288671 RchiOBHm_Chr6g0288701 RchiOBHm_Chr6g0288711 RchiOBHm_Chr6g0288761 RchiOBHm_Chr6g0310751
rosa_laevigata	RLG00000012367 RLG00000012370 RLG00000012375 RLG00000012379 RLG00000012382 RLG00000012383 RLG00000012384 RLG00000012386
rosa_multiflora	Rmu_co8507331.1_g000002 Rmu_sc0004688.1_g000011 Rmu_sc0004861.1_g000006 Rmu_sc0004861.1_g000009 Rmu_sc0008285.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179890 Rroxscaffold_7G00179930 Rroxscaffold_7G00179940 Rroxscaffold_7G00179950 Rroxscaffold_7G00179960
rosa_rugosa	Rorug06G0197500 Rorug06G0197600 Rorug06G0197600 Rorug06G0197700 Rorug06G0383000
rosa_samantha	Rh6AG309200 Rh6AG309300 Rh6AG309400 Rh6AG496800 Rh6BG314400 Rh6BG314500 Rh6BG314600 Rh6BG314700 Rh6BG314800 Rh6BG315300 Rh6CG321800 Rh6CG321900 Rh6CG322000 Rh6CG322800 Rh6DG307600 Rh6DG307700 Rh6DG307800 Rh6DG308500 Rh6DG498200
rosa_wichuraiana	Rw6G026700 Rw6G026710 Rw6G026740 Rw6G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	423
AcsI	RAATTY	2 cut(s)	78, 205
AfeI	AGCGCT	1 cut(s)	48
AgsI	TTSAA	6 cut(s)	137, 202, 314, 362, 368, 517
AjnI	CCWGG	1 cut(s)	482
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	2 cut(s)	71, 264
AlwI	GGATC	1 cut(s)	423
Aor51HI	AGCGCT	1 cut(s)	48
AoxI	GGCC	1 cut(s)	480
ApeKI	GCWGC	4 cut(s)	44, 58, 160, 257
ApoI	RAATTY	2 cut(s)	78, 205
Asp700I	GAANNNNTTC	2 cut(s)	141, 446
AspLEI	GCGC	1 cut(s)	49
AsuNHI	GCTAGC	1 cut(s)	49
BauI	CACGAG	2 cut(s)	155, 192
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	4 cut(s)	45, 56, 172, 269
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	71, 264
BfaI	CTAG	2 cut(s)	50, 422
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	50
BglII	AGATCT	2 cut(s)	35, 232
BisI	GCNGC	4 cut(s)	45, 59, 161, 258
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	4 cut(s)	46, 60, 162, 259
Bme1390I	CCNGG	1 cut(s)	484
BmrFI	CCNGG	1 cut(s)	484
BmsI	GCATC	1 cut(s)	120
BmtI	GCTAGC	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
Bpu1102I	GCTNAGC	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	100, 483
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	2 cut(s)	100, 483
BseGI	GGATG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	45, 56, 172, 269
BshFI	GGCC	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	440
BslFI	GGGAC	2 cut(s)	320, 500
BsmAI	GTCTC	2 cut(s)	71, 264
BsmFI	GGGAC	2 cut(s)	320, 500
BsnI	GGCC	1 cut(s)	482
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	4 cut(s)	35, 232, 415, 491
Bsp1720I	GCTNAGC	1 cut(s)	407
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	82
BspMAI	CTGCAG	1 cut(s)	169
BspOI	GCTAGC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	423
BspTNI	GGTCTC	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	100, 483
BssMI	GATC	4 cut(s)	35, 232, 415, 491
BssSI	CACGAG	2 cut(s)	155, 192
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	2 cut(s)	155, 192
Bst2UI	CCWGG	1 cut(s)	484
Bst4CI	ACNGT	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	435
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	4 cut(s)	51, 165, 246, 427
BstDEI	CTNAG	3 cut(s)	68, 407, 503
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	522
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	4 cut(s)	38, 235, 418, 494
BstMAI	GTCTC	2 cut(s)	71, 264
BstMBI	GATC	4 cut(s)	35, 232, 415, 491
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 55, 254, 435
BstNI	CCWGG	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	45, 56, 172, 269
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	2 cut(s)	35, 232
BstYI	RGATCY	2 cut(s)	35, 232
BsuRI	GGCC	1 cut(s)	482
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	522
BtsI	GCAGTG	3 cut(s)	53, 232, 317
BtsIMutI	CAGTG	3 cut(s)	53, 232, 317
Cac8I	GCNNGC	4 cut(s)	51, 165, 246, 427
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	49
CviAII	CATG	5 cut(s)	62, 83, 101, 430, 459
CviJI	RGCY	6 cut(s)	5, 163, 290, 406, 446, 482
CviKI_1	RGCY	6 cut(s)	5, 163, 290, 406, 446, 482
DdeI	CTNAG	3 cut(s)	68, 407, 503
DpnI	GATC	4 cut(s)	37, 234, 417, 493
DpnII	GATC	4 cut(s)	35, 232, 415, 491
DraI	TTTAAA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	71
Eco47III	AGCGCT	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	5 cut(s)	65, 86, 104, 433, 462
FaiI	YATR	8 cut(s)	63, 84, 102, 122, 326, 345, 431, 460
FaqI	GGGAC	2 cut(s)	320, 500
FatI	CATG	5 cut(s)	61, 82, 100, 429, 458
Fnu4HI	GCNGC	4 cut(s)	45, 59, 161, 258
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	4 cut(s)	45, 59, 161, 258
FspBI	CTAG	2 cut(s)	50, 422
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	4 cut(s)	45, 59, 161, 258
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	482
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	5 cut(s)	65, 86, 104, 433, 462
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	2 cut(s)	97, 214
HindII	GTYRAC	2 cut(s)	97, 214
HindIII	AAGCTT	1 cut(s)	444
HinfI	GANTC	1 cut(s)	22
HpaI	GTTAAC	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	97, 214
Hpy188I	TCNGA	2 cut(s)	237, 382
Hpy188III	TCNNGA	5 cut(s)	83, 155, 194, 202, 473
Hpy8I	GTNNAC	2 cut(s)	97, 214
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	6 cut(s)	44, 61, 167, 225, 248, 285
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 55, 254, 435
HpyF3I	CTNAG	3 cut(s)	68, 407, 503
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	5 cut(s)	65, 86, 104, 433, 462
HspAI	GCGC	1 cut(s)	47
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	35, 232, 415, 491
LpnPI	CCDG	5 cut(s)	55, 177, 469, 486, 496
Lsp1109I	GCAGC	4 cut(s)	45, 56, 172, 269
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	2 cut(s)	50, 422
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	4 cut(s)	37, 234, 417, 493
MboI	GATC	4 cut(s)	35, 232, 415, 491
MboII	GAAGA	1 cut(s)	182
MflI	RGATCY	2 cut(s)	35, 232
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	6 cut(s)	78, 205, 239, 262, 357, 383
MnlI	CCTC	3 cut(s)	118, 286, 536
MroXI	GAANNNNTTC	2 cut(s)	141, 446
MseI	TTAA	5 cut(s)	75, 96, 348, 356, 530
MslI	CAYNNNNRTG	1 cut(s)	457
MspR9I	CCNGG	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	4 cut(s)	50, 55, 254, 435
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	4 cut(s)	35, 232, 415, 491
NheI	GCTAGC	1 cut(s)	49
NlaIII	CATG	5 cut(s)	65, 86, 104, 433, 462
NmuCI	GTSAC	1 cut(s)	194
PagI	TCATGA	1 cut(s)	82
PdmI	GAANNNNTTC	2 cut(s)	141, 446
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	4 cut(s)	46, 60, 162, 259
Ppu21I	YACGTR	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	482
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	35, 232
RseI	CAYNNNNRTG	1 cut(s)	457
SaqAI	TTAA	5 cut(s)	75, 96, 348, 356, 530
SatI	GCNGC	4 cut(s)	45, 59, 161, 258
Sau3AI	GATC	4 cut(s)	35, 232, 415, 491
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	1 cut(s)	440
SetI	ASST	5 cut(s)	74, 142, 278, 331, 448
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	457
Sse9I	AATT	6 cut(s)	78, 205, 239, 262, 357, 383
SspMI	CTAG	2 cut(s)	50, 422
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	440
TasI	AATT	6 cut(s)	78, 205, 239, 262, 357, 383
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	5 cut(s)	75, 96, 348, 356, 530
Tru9I	TTAA	5 cut(s)	75, 96, 348, 356, 530
TscAI	CASTG	3 cut(s)	60, 232, 324
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	4 cut(s)	44, 58, 160, 257
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	3 cut(s)	60, 232, 324
XapI	RAATTY	2 cut(s)	78, 205
XmnI	GAANNNNTTC	2 cut(s)	141, 446
XspI	CTAG	2 cut(s)	50, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.