Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000837

Physical Location & Seq

Genomic Coordinates Reverse (-)

50855874 .. 50857049

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG307700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAGGGGATCCAGAAAAGTATCCGAGGGTTTCATGAGCTGCCCCAGGAGGAGAAGGTGAAGTGGTACTCGCGTGATTTTACGCAGAAGGTTAACTTCTTCAGCAATGGAGATTTGAAGGTGTCGACGCCAGCTGACTGGAGGGATACCTTGTCATGCAAGGTCCTGGAAGACCCAGAAAGCTTTGAAGCAATACCGCAAGTGTGCAGACGAGAAGTTAGTGAGTATATGAAACGCATCGATGGAGTGCAAGAGAAGTTATCCGAGTTATTTTCAGAAGCTTTAGGTCTCAATAGTGATTATCTTGCAAGCACAGGGTGCTTCAAATCGAGGTCACTGGCGTGCCACTATTTCCCGATTTGCCCTGAACCGCATTTGACTATGGGCGGAACCAAGCATTCGGACCTCTCGTTTCTCACCTTGCTCCTTCAAGACAGTGTTGGCGGCCTACAAGTTTTTCATCAAAATGTTTGGATTGATGTTCCCCCAGTGAAGGGAGCTTTGCTAGCAAATATTGCTGACATGATGCAGATCATTACAAATGGCAAGTTCAAAAGCGTGGAGCATAGAGTTTTGATGAAACCAACCGTCGAGCCTCGTATCTCAATTGCATGTTTTTTGGGTACGGATGACCTCCAAAAACCATACGGGCCGATAAAAGAACTTACATCGGAAAACAATCCACCGATTTATAGCGAAGTCAAATTCGGAGAATACATGAAAAAGTATAAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

245

Amino Acids

27.85

Weight (kDa)

6.1

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	112 - 208	1.3e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830 FvH4_2g21831 FvH4_2g21910
malus_domestica	MD05G1200300.v1.1 MD05G1205100.v1.1 MD10G1186700.v1.1 MD10G1187000.v1.1
prunus_persica	Prupe.8G226500_v2.0.a1 Prupe.8G226700_v2.0.a1 Prupe.8G226800_v2.0.a1
pyrus_communis	pycom05g18690 pycom05g18720 pycom05g19130 pycom10g16150 pycom10g16170
rosa_chinensis	RchiOBHm_Chr6g0288651 RchiOBHm_Chr6g0288661 RchiOBHm_Chr6g0288671 RchiOBHm_Chr6g0288701 RchiOBHm_Chr6g0288711 RchiOBHm_Chr6g0288761 RchiOBHm_Chr6g0310751
rosa_laevigata	RLG00000012367 RLG00000012370 RLG00000012375 RLG00000012379 RLG00000012382 RLG00000012383 RLG00000012384 RLG00000012386
rosa_multiflora	Rmu_co8507331.1_g000002 Rmu_sc0004688.1_g000011 Rmu_sc0004861.1_g000006 Rmu_sc0004861.1_g000009 Rmu_sc0008285.1_g000003
rosa_roxburghii	Rroxscaffold_7G00179890 Rroxscaffold_7G00179930 Rroxscaffold_7G00179940 Rroxscaffold_7G00179950 Rroxscaffold_7G00179960
rosa_rugosa	Rorug06G0197500 Rorug06G0197600 Rorug06G0197600 Rorug06G0197700 Rorug06G0383000
rosa_samantha	Rh6AG309200 Rh6AG309300 Rh6AG309400 Rh6AG496800 Rh6BG314400 Rh6BG314500 Rh6BG314600 Rh6BG314700 Rh6BG314800 Rh6BG315300 Rh6CG321800 Rh6CG321900 Rh6CG322000 Rh6CG322800 Rh6DG307600 Rh6DG307700 Rh6DG307800 Rh6DG308500 Rh6DG498200
rosa_wichuraiana	Rw6G026700 Rw6G026710 Rw6G026740 Rw6G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	1 cut(s)	73
AciI	CCGC	4 cut(s)	197, 371, 387, 444
AclWI	GGATC	2 cut(s)	4, 17
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	318
AfaI	GTAC	2 cut(s)	68, 625
AfiI	CCNNNNNNNGG	2 cut(s)	493, 494
AgsI	TTSAA	5 cut(s)	118, 188, 325, 431, 553
AjnI	CCWGG	2 cut(s)	45, 165
AleI	CACNNNNGTG	1 cut(s)	340
AluBI	AGCT	5 cut(s)	40, 134, 183, 281, 500
AluI	AGCT	5 cut(s)	40, 134, 183, 281, 500
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	2 cut(s)	4, 17
AoxI	GGCC	2 cut(s)	445, 650
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	1 cut(s)	704
AspS9I	GGNCC	3 cut(s)	163, 403, 650
AsuHPI	GGTGA	2 cut(s)	70, 409
AsuNHI	GCTAGC	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	163, 403
BaeI	ACNNNNGTAYC	2 cut(s)	58, 91
BamHI	GGATCC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	47, 167
BciVI	GTATCC	2 cut(s)	32, 139
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	506
BfuI	GTATCC	2 cut(s)	32, 139
BisI	GCNGC	2 cut(s)	41, 445
BlsI	GCNGC	2 cut(s)	42, 446
Bme1390I	CCNGG	2 cut(s)	47, 167
Bme18I	GGWCC	2 cut(s)	163, 403
BmgT120I	GGNCC	3 cut(s)	163, 403, 650
BmiI	GGNNCC	2 cut(s)	11, 391
BmrFI	CCNGG	2 cut(s)	47, 167
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	2 cut(s)	246, 516
BmtI	GCTAGC	1 cut(s)	509
BmuI	ACTGGG	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	160
Bsa29I	ATCGAT	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	25, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 494
Bse1I	ACTGG	3 cut(s)	143, 342, 488
Bse3DI	GCAATG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	530
BseBI	CCWGG	2 cut(s)	47, 167
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	25, 45
BseGI	GGATG	1 cut(s)	634
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	2 cut(s)	493, 494
BseMI	GCAATG	1 cut(s)	112
BseNI	ACTGG	3 cut(s)	143, 342, 488
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	447, 652
BshVI	ATCGAT	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	493, 494
BsmAI	GTCTC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	447, 652
Bso31I	GGTCTC	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	9, 531
BspACI	CCGC	4 cut(s)	197, 371, 387, 444
BspANI	GGCC	2 cut(s)	447, 652
BspDI	ATCGAT	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	11, 391
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	2 cut(s)	4, 17
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	112
BsrI	ACTGG	3 cut(s)	143, 342, 488
BssECI	CCNNGG	2 cut(s)	25, 45
BssMI	GATC	2 cut(s)	9, 531
BssNI	GRCGYC	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	47, 167
Bst4CI	ACNGT	2 cut(s)	437, 589
BstACI	GRCGYC	1 cut(s)	128
BstAPI	GCANNNNNTGC	2 cut(s)	318, 515
BstC8I	GCNNGC	4 cut(s)	132, 310, 343, 507
BstF5I	GGATG	1 cut(s)	634
BstFNI	CGCG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	12, 534
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	9, 531
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 506, 515
BstNI	CCWGG	2 cut(s)	47, 167
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	2 cut(s)	45, 165
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	9
BstXI	CCANNNNNNTGG	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	9
Bsu15I	ATCGAT	1 cut(s)	240
BsuI	GTATCC	2 cut(s)	32, 139
BsuRI	GGCC	2 cut(s)	447, 652
BsuTUI	ATCGAT	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	634
BtsIMutI	CAGTG	3 cut(s)	335, 442, 495
Cac8I	GCNNGC	4 cut(s)	132, 310, 343, 507
CciI	TCATGA	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	163, 403, 650
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	67, 624
CviAII	CATG	5 cut(s)	35, 156, 523, 612, 718
CviJI	RGCY	8 cut(s)	40, 134, 183, 281, 447, 500, 595, 652
CviKI_1	RGCY	8 cut(s)	40, 134, 183, 281, 447, 500, 595, 652
CviQI	GTAC	2 cut(s)	67, 624
DpnI	GATC	2 cut(s)	11, 533
DpnII	GATC	2 cut(s)	9, 531
DraIII	CACNNNGTG	1 cut(s)	318
EciI	GGCGGA	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	163, 403
Eco57I	CTGAAG	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	45, 165
FaeI	CATG	5 cut(s)	38, 159, 526, 615, 721
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	5 cut(s)	34, 155, 522, 611, 717
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	2 cut(s)	41, 445
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	2 cut(s)	41, 445
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	2 cut(s)	41, 445
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	447, 652
HgaI	GACGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	5 cut(s)	38, 159, 526, 615, 721
HincII	GTYRAC	2 cut(s)	94, 126
HindII	GTYRAC	2 cut(s)	94, 126
HindIII	AAGCTT	2 cut(s)	181, 279
HpaI	GTTAAC	1 cut(s)	94
HphI	GGTGA	2 cut(s)	70, 409
Hpy166II	GTNNAC	2 cut(s)	94, 126
Hpy188I	TCNGA	6 cut(s)	26, 265, 277, 403, 673, 710
Hpy188III	TCNNGA	4 cut(s)	13, 35, 355, 431
Hpy8I	GTNNAC	2 cut(s)	94, 126
Hpy99I	CGWCG	2 cut(s)	130, 593
HpyAV	CCTTC	5 cut(s)	49, 82, 112, 437, 487
HpyCH4III	ACNGT	2 cut(s)	437, 589
HpyCH4V	TGCA	6 cut(s)	159, 207, 250, 308, 529, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 506, 515
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	5 cut(s)	38, 159, 526, 615, 721
KspAI	GTTAAC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	9, 531
LmnI	GCTCC	3 cut(s)	429, 497, 562
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	2 cut(s)	246, 516
MaeI	CTAG	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	2 cut(s)	11, 533
MboI	GATC	2 cut(s)	9, 531
MboII	GAAGA	2 cut(s)	91, 182
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	1 cut(s)	9
MluCI	AATT	2 cut(s)	606, 704
MnlI	CCTC	7 cut(s)	20, 43, 135, 324, 416, 606, 644
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	2 cut(s)	340, 465
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	47, 167
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	2 cut(s)	47, 167
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	3 cut(s)	318, 506, 515
NdeII	GATC	2 cut(s)	9, 531
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	5 cut(s)	38, 159, 526, 615, 721
NlaIV	GGNNCC	2 cut(s)	11, 391
NmuCI	GTSAC	1 cut(s)	333
NspI	RCATGY	1 cut(s)	615
OliI	CACNNNNGTG	1 cut(s)	340
PagI	TCATGA	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PctI	GAATGC	1 cut(s)	397
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	42, 446
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	2 cut(s)	45, 165
PspGI	CCWGG	2 cut(s)	45, 165
PspN4I	GGNNCC	2 cut(s)	11, 391
PspPI	GGNCC	3 cut(s)	163, 403, 650
PspPPI	RGGWCCY	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	9
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	68, 625
RsaNI	GTAC	2 cut(s)	67, 624
RseI	CAYNNNNRTG	2 cut(s)	340, 465
SalI	GTCGAC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	2 cut(s)	41, 445
Sau3AI	GATC	2 cut(s)	9, 531
Sau96I	GGNCC	3 cut(s)	163, 403, 650
ScrFI	CCNGG	2 cut(s)	47, 167
SfaNI	GCATC	2 cut(s)	246, 516
SinI	GGWCC	2 cut(s)	163, 403
SmiMI	CAYNNNNRTG	2 cut(s)	340, 465
Sse9I	AATT	2 cut(s)	606, 704
SsiI	CCGC	4 cut(s)	197, 371, 387, 444
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	2 cut(s)	45, 165
TaaI	ACNGT	2 cut(s)	437, 589
TaqI	TCGA	4 cut(s)	125, 240, 329, 591
TasI	AATT	2 cut(s)	606, 704
TauI	GCSGC	1 cut(s)	447
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	3 cut(s)	342, 442, 495
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	5 cut(s)	23, 245, 449, 593, 734
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	3 cut(s)	342, 442, 495
VpaK11BI	GGWCC	2 cut(s)	163, 403
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.